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Conserved domains on  [gi|1907112420|ref|XP_017172085|]
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R-spondin-2 isoform X4 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Furin-like_2 super family cl25785
Furin-like repeat, cysteine-rich; The furin-like cysteine rich region has been found in a ...
 40-141 8.97e-47

Furin-like repeat, cysteine-rich; The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation.


The actual alignment was detected with superfamily member pfam15913:

Pssm-ID: 464939 [Multi-domain]  Cd Length: 102  Bit Score: 150.27  E-value: 8.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907112420  40 CKGCLSCSKDNGCSRCQQKLFFFLRREGMRQYGECLHSCPSGYYGHRAPDMNRCARCRIENCDSCFSKDFCTKCKVGFYL 119
Cdd:pfam15913   1 CSGCVLCSEENGCLTCQPRLFLLLERNGIRQYGVCLHSCPPGYFGIRGQEVNRCTKCKAENCESCFSKDFCTKCKEGFYL 80

                          90       100
                  ....*....|....*....|..
gi 1907112420 120 HRGRCFDECPDGFAPLDETMEC 141
Cdd:pfam15913  81 HKGKCLDTCPEGTAAQNSTMEC 102
TSP1_spondin super family cl46269
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 144-197 1.71e-08

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


The actual alignment was detected with superfamily member pfam19028:

Pssm-ID: 480609  Cd Length: 52  Bit Score: 49.59  E-value: 1.71e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907112420 144 CEVGHWSEWGTCSRnnrTCGFkwGLETRTRQIVKKPAKDTIPCPTIAESRRCKM 197
Cdd:pfam19028   1 CVVSEWSEWSECSV---TCGG--GVQTRTRTVIVEPQNGGRPCPELLERRPCNL 49
 
Name Accession Description Interval E-value
Furin-like_2 pfam15913
Furin-like repeat, cysteine-rich; The furin-like cysteine rich region has been found in a ...
 40-141 8.97e-47

Furin-like repeat, cysteine-rich; The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation.


Pssm-ID: 464939 [Multi-domain]  Cd Length: 102  Bit Score: 150.27  E-value: 8.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907112420  40 CKGCLSCSKDNGCSRCQQKLFFFLRREGMRQYGECLHSCPSGYYGHRAPDMNRCARCRIENCDSCFSKDFCTKCKVGFYL 119
Cdd:pfam15913   1 CSGCVLCSEENGCLTCQPRLFLLLERNGIRQYGVCLHSCPPGYFGIRGQEVNRCTKCKAENCESCFSKDFCTKCKEGFYL 80

                          90       100
                  ....*....|....*....|..
gi 1907112420 120 HRGRCFDECPDGFAPLDETMEC 141
Cdd:pfam15913  81 HKGKCLDTCPEGTAAQNSTMEC 102
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 144-197 1.71e-08

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 49.59  E-value: 1.71e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907112420 144 CEVGHWSEWGTCSRnnrTCGFkwGLETRTRQIVKKPAKDTIPCPTIAESRRCKM 197
Cdd:pfam19028   1 CVVSEWSEWSECSV---TCGG--GVQTRTRTVIVEPQNGGRPCPELLERRPCNL 49
FU cd00064
Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is ...
 99-142 3.55e-04

Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.


Pssm-ID: 238021 [Multi-domain]  Cd Length: 49  Bit Score: 37.50  E-value: 3.55e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1907112420  99 ENCDSCFSK--DFCTKCKVGFYLHRGRCFDECPDGFAPLDETMECV 142
Cdd:cd00064     4 PSCATCTGPgpDQCTSCRHGFYLDGGTCVSECPEGTYADTEGGVCL 49
FU smart00261
Furin-like repeats;
91-132 4.46e-03

Furin-like repeats;


Pssm-ID: 214589 [Multi-domain]  Cd Length: 45  Bit Score: 34.41  E-value: 4.46e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1907112420   91 NRCARCRiENCDSCFSK--DFCTKCKVGFYLHRGRCFDECPDGF 132
Cdd:smart00261   2 GECKPCH-PECATCTGPgpDDCTSCKHGFFLDGGKCVSECPPGT 44
 
Name Accession Description Interval E-value
Furin-like_2 pfam15913
Furin-like repeat, cysteine-rich; The furin-like cysteine rich region has been found in a ...
 40-141 8.97e-47

Furin-like repeat, cysteine-rich; The furin-like cysteine rich region has been found in a variety of proteins from eukaryotes that are involved in the mechanism of signal transduction by receptor tyrosine kinases, which involves receptor aggregation.


Pssm-ID: 464939 [Multi-domain]  Cd Length: 102  Bit Score: 150.27  E-value: 8.97e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907112420  40 CKGCLSCSKDNGCSRCQQKLFFFLRREGMRQYGECLHSCPSGYYGHRAPDMNRCARCRIENCDSCFSKDFCTKCKVGFYL 119
Cdd:pfam15913   1 CSGCVLCSEENGCLTCQPRLFLLLERNGIRQYGVCLHSCPPGYFGIRGQEVNRCTKCKAENCESCFSKDFCTKCKEGFYL 80

                          90       100
                  ....*....|....*....|..
gi 1907112420 120 HRGRCFDECPDGFAPLDETMEC 141
Cdd:pfam15913  81 HKGKCLDTCPEGTAAQNSTMEC 102
TSP1_spondin pfam19028
Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an ...
 144-197 1.71e-08

Spondin-like TSP1 domain; This entry represents a sub-type of TSP1 domains that have an alternative disulphide binding pattern compared to the canonical TSP1 domain.


Pssm-ID: 465948  Cd Length: 52  Bit Score: 49.59  E-value: 1.71e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1907112420 144 CEVGHWSEWGTCSRnnrTCGFkwGLETRTRQIVKKPAKDTIPCPTIAESRRCKM 197
Cdd:pfam19028   1 CVVSEWSEWSECSV---TCGG--GVQTRTRTVIVEPQNGGRPCPELLERRPCNL 49
FU cd00064
Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is ...
 99-142 3.55e-04

Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.


Pssm-ID: 238021 [Multi-domain]  Cd Length: 49  Bit Score: 37.50  E-value: 3.55e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1907112420  99 ENCDSCFSK--DFCTKCKVGFYLHRGRCFDECPDGFAPLDETMECV 142
Cdd:cd00064     4 PSCATCTGPgpDQCTSCRHGFYLDGGTCVSECPEGTYADTEGGVCL 49
FU smart00261
Furin-like repeats;
91-132 4.46e-03

Furin-like repeats;


Pssm-ID: 214589 [Multi-domain]  Cd Length: 45  Bit Score: 34.41  E-value: 4.46e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1907112420   91 NRCARCRiENCDSCFSK--DFCTKCKVGFYLHRGRCFDECPDGF 132
Cdd:smart00261   2 GECKPCH-PECATCTGPgpDDCTSCKHGFFLDGGKCVSECPPGT 44
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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