NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1046894687|ref|XP_017450058|]
View 

POU domain, class 6, transcription factor 1 isoform X5 [Rattus norvegicus]

Protein Classification

POU family transcription factor( domain architecture ID 11036637)

POU (Pit-Oct-Unc) family transcription factor binds specific DNA sequences to direct gene expression programs, playing a role in orchestrating embryonic development and directing cellular fate

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Pou super family cl22952
Pou domain - N-terminal to homeobox domain;
139-213 1.83e-40

Pou domain - N-terminal to homeobox domain;


The actual alignment was detected with superfamily member smart00352:

Pssm-ID: 473999  Cd Length: 75  Bit Score: 135.64  E-value: 1.83e-40
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046894687  139 EDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAE 213
Cdd:smart00352   1 DDDTDPRELEAFAKQFKQRRIKLGFTQADVGLALGALYGPAFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEAE 75
Homeodomain pfam00046
Homeodomain;
235-291 2.13e-21

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 85.24  E-value: 2.13e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1046894687 235 RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN 291
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
23-155 5.31e-05

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK14950:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 585  Bit Score: 44.42  E-value: 5.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687  23 VVNSASVATPAPAQSLQVQAVTPQLllnAQGQVIATLASSPLPQPVAVRKPSTPESPAKSEV-QPIQPTQAVPPPAVILT 101
Cdd:PRK14950  359 LLVPVPAPQPAKPTAAAPSPVRPTP---APSTRPKAAAAANIPPKEPVRETATPPPVPPRPVaPPVPHTPESAPKLTRAA 435

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1046894687 102 SPAPAlKPSASAPIPitcsetptvsqlvSKPHTPSLDEDGINLEEIREFAKNFK 155
Cdd:PRK14950  436 IPVDE-KPKYTPPAP-------------PKEEEKALIADGDVLEQLEAIWKQIL 475
 
Name Accession Description Interval E-value
POU smart00352
Found in Pit-Oct-Unc transcription factors;
139-213 1.83e-40

Found in Pit-Oct-Unc transcription factors;


Pssm-ID: 197673  Cd Length: 75  Bit Score: 135.64  E-value: 1.83e-40
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046894687  139 EDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAE 213
Cdd:smart00352   1 DDDTDPRELEAFAKQFKQRRIKLGFTQADVGLALGALYGPAFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEAE 75
Pou pfam00157
Pou domain - N-terminal to homeobox domain;
142-213 3.53e-38

Pou domain - N-terminal to homeobox domain;


Pssm-ID: 459692  Cd Length: 72  Bit Score: 129.32  E-value: 3.53e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046894687 142 INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAE 213
Cdd:pfam00157   1 LNLEELEEFAKEFKQRRIKLGYTQADVGSALGALYGPVFSQSTICRFEKLDLSLKNMCKLKPLLEKWLEEAE 72
Homeodomain pfam00046
Homeodomain;
235-291 2.13e-21

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 85.24  E-value: 2.13e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1046894687 235 RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN 291
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 234-290 4.94e-19

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 78.83  E-value: 4.94e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1046894687  234 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 290
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 235-293 1.91e-17

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 74.59  E-value: 1.91e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1046894687 235 RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTS 293
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
231-290 1.74e-07

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 49.74  E-value: 1.74e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687 231 PSKKRKRRTsfTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 290
Cdd:COG5576    50 PPKSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEK 107
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 23-155 5.31e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 44.42  E-value: 5.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687  23 VVNSASVATPAPAQSLQVQAVTPQLllnAQGQVIATLASSPLPQPVAVRKPSTPESPAKSEV-QPIQPTQAVPPPAVILT 101
Cdd:PRK14950  359 LLVPVPAPQPAKPTAAAPSPVRPTP---APSTRPKAAAAANIPPKEPVRETATPPPVPPRPVaPPVPHTPESAPKLTRAA 435

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1046894687 102 SPAPAlKPSASAPIPitcsetptvsqlvSKPHTPSLDEDGINLEEIREFAKNFK 155
Cdd:PRK14950  436 IPVDE-KPKYTPPAP-------------PKEEEKALIADGDVLEQLEAIWKQIL 475
 
Name Accession Description Interval E-value
POU smart00352
Found in Pit-Oct-Unc transcription factors;
139-213 1.83e-40

Found in Pit-Oct-Unc transcription factors;


Pssm-ID: 197673  Cd Length: 75  Bit Score: 135.64  E-value: 1.83e-40
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1046894687  139 EDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAE 213
Cdd:smart00352   1 DDDTDPRELEAFAKQFKQRRIKLGFTQADVGLALGALYGPAFSQTTICRFEALQLSFKNMCKLKPLLQKWLEEAE 75
Pou pfam00157
Pou domain - N-terminal to homeobox domain;
142-213 3.53e-38

Pou domain - N-terminal to homeobox domain;


Pssm-ID: 459692  Cd Length: 72  Bit Score: 129.32  E-value: 3.53e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046894687 142 INLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAE 213
Cdd:pfam00157   1 LNLEELEEFAKEFKQRRIKLGYTQADVGSALGALYGPVFSQSTICRFEKLDLSLKNMCKLKPLLEKWLEEAE 72
Homeodomain pfam00046
Homeodomain;
235-291 2.13e-21

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 85.24  E-value: 2.13e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1046894687 235 RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKN 291
Cdd:pfam00046   1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 234-290 4.94e-19

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 78.83  E-value: 4.94e-19
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1046894687  234 KRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 290
Cdd:smart00389   1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 235-293 1.91e-17

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 74.59  E-value: 1.91e-17
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1046894687 235 RKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTS 293
Cdd:cd00086     1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
231-290 1.74e-07

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 49.74  E-value: 1.74e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687 231 PSKKRKRRTsfTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLK 290
Cdd:COG5576    50 PPKSKRRRT--TDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEK 107
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 23-155 5.31e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 44.42  E-value: 5.31e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687  23 VVNSASVATPAPAQSLQVQAVTPQLllnAQGQVIATLASSPLPQPVAVRKPSTPESPAKSEV-QPIQPTQAVPPPAVILT 101
Cdd:PRK14950  359 LLVPVPAPQPAKPTAAAPSPVRPTP---APSTRPKAAAAANIPPKEPVRETATPPPVPPRPVaPPVPHTPESAPKLTRAA 435

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1046894687 102 SPAPAlKPSASAPIPitcsetptvsqlvSKPHTPSLDEDGINLEEIREFAKNFK 155
Cdd:PRK14950  436 IPVDE-KPKYTPPAP-------------PKEEEKALIADGDVLEQLEAIWKQIL 475
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 11-128 7.53e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.85  E-value: 7.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687  11 NAQGQVIGALPWVVNSASVATPAPA-----QSLQVQAVTPQLLLNAQGQVIATLASSPLPQPVAVRKPSTPES-PAKSEV 84
Cdd:PRK14951  368 AAAEAAAPAEKKTPARPEAAAPAAApvaqaAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAaPAAVAL 447

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1046894687  85 QPIQPTQAVPPPAVI--LTSPAPALKPSASAPIPITCSETPTVSQL 128
Cdd:PRK14951  448 APAPPAQAAPETVAIpvRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
PHA03247 PHA03247
large tegument protein UL36; Provisional
 31-136 7.55e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 7.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687   31 TPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPLPQPVAV--------------RKPSTPESPAKSEVQPIQPTQAVPPP 96
Cdd:PHA03247  2707 TPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpatpggparparpPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1046894687   97 AVILTSPAPALKPSASAPIPITCSETPTVSQL--VSKPHTPS 136
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALppAASPAGPL 2828
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 2-142 8.97e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 40.62  E-value: 8.97e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687   2 PGISSPILTNAQGQVIGALPWVVNSASVATPAPAQSLQVQAVTPQlLLNAQGQVIATLASSPLPQPVAVRKPSTPESPAK 81
Cdd:PRK07994  377 PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ-LLAARQQLQRAQGATKAKKSEPAAASRARPVNSA 455

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046894687  82 SEVQPIQPTQAVPPPAVILTSPAPALKPSASAPIPITCSETPT-VSQLVSKPHTPSLDEDGI 142
Cdd:PRK07994  456 LERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKaLKKALEHEKTPELAAKLA 517
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
10-139 1.11e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 1.11e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687  10 TNAQGQVIGALPwVVNSASVATPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPLPQPVAVRK------------PSTPE 77
Cdd:PRK12323  376 TAAAAPVAQPAP-AAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARqasargpggapaPAPAP 454

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1046894687  78 SPAKSEVQPIQPTQAVPPPAVILTSPAPALKPSASAPIPitcSETPTVSQLVSKPHTPSLDE 139
Cdd:PRK12323  455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPAD---DDPPPWEELPPEFASPAPAQ 513
PHA03247 PHA03247
large tegument protein UL36; Provisional
 27-135 1.16e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 1.16e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687   27 ASVATPA--PAQSLQVQAVTPQlllnAQGQVIATLASSPLPQPVAVRKP-STPESPAKSEVQPIQPTQAVP-PPAVILTS 102
Cdd:PHA03247  2873 AKPAAPArpPVRRLARPAVSRS----TESFALPPDQPERPPQPQAPPPPqPQPQPPPPPQPQPPPPPPPRPqPPLAPTTD 2948

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1046894687  103 PAPALKPSASAPIP----ITCSETPTVSQLVSKPHTP 135
Cdd:PHA03247  2949 PAGAGEPSGAVPQPwlgaLVPGRVAVPRFRVPQPAPS 2985
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
18-132 3.34e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 39.09  E-value: 3.34e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687  18 GALPWVVNSASVATPAPAQSLQVQAVTPQlllnAQGQVIATLASSPLPQPVAVRKPSTPESPAKSEVQPIQPTQAVPPPA 97
Cdd:PRK12323  371 GAGPATAAAAPVAQPAPAAAAPAAAAPAP----AAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1046894687  98 VILTSPAPALKPSASAPIPITCSETPTVSQLVSKP 132
Cdd:PRK12323  447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPA 481
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
18-123 4.30e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 38.68  E-value: 4.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687  18 GALPWVVNSASVATPAPAQSLQVQAVTPQLLLNAQGQVIATLASSPLPQPVAVRKPSTPESPAKSEVQPIQPTQAVPPPA 97
Cdd:PRK07003  365 GGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAAD 444

                          90       100
                  ....*....|....*....|....*.
gi 1046894687  98 VILTSPAPALKPSASAPIPITCSETP 123
Cdd:PRK07003  445 GDAPVPAKANARASADSRCDERDAQP 470
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1-136 6.22e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 38.29  E-value: 6.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687   1 MPGISSPILTNAQGQVIGALPWVVNSASVATPAPAQSLQVQAvtpqlllNAQGQVIATLASSPLPQPVAVRKPSTPESPA 80
Cdd:PRK07003  399 VTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGD-------DAADGDAPVPAKANARASADSRCDERDAQPP 471

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1046894687  81 KSEVQPIQPTQAVPPPAVILTSPaPALKPSASAPIPITCSETPTVSQLVSKPHTPS 136
Cdd:PRK07003  472 ADSGSASAPASDAPPDAAFEPAP-RAAAPSAATPAAVPDARAPAAASREDAPAAAA 526
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
28-132 8.44e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 37.83  E-value: 8.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687  28 SVATPAPAQSLQVQAVTPQlllnAQGQViATLASSPLPQPVAVRKPSTPESPakseVQPIQPTQAVPPPavilTSPAPAL 107
Cdd:PRK14971  382 VFTQPAAAPQPSAAAAASP----SPSQS-SAAAQPSAPQSATQPAGTPPTVS----VDPPAAVPVNPPS----TAPQAVR 448

                          90       100
                  ....*....|....*....|....*
gi 1046894687 108 KPSASAPIPITCSETPTVSQLVSKP 132
Cdd:PRK14971  449 PAQFKEEKKIPVSKVSSLGPSTLRP 473
PHA03247 PHA03247
large tegument protein UL36; Provisional
 28-130 9.28e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 37.61  E-value: 9.28e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1046894687   28 SVATPAPAQSLQVQAVTP-------QLLLNAQGQVIATLASSPLPQPvAVRKPSTPESPAKSEVQPI---QPTQAVPPPA 97
Cdd:PHA03247  2885 RLARPAVSRSTESFALPPdqperppQPQAPPPPQPQPQPPPPPQPQP-PPPPPPRPQPPLAPTTDPAgagEPSGAVPQPW 2963

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1046894687   98 V-------------ILTSPAPALKPSASAPIPITCSETPTVSQLVS 130
Cdd:PHA03247  2964 LgalvpgrvavprfRVPQPAPSREAPASSTPPLTGHSLSRVSSWAS 3009
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH