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Conserved domains on  [gi|1370462251|ref|XP_024304806|]
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coiled-coil domain-containing protein 91 isoform X4 [Homo sapiens]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 103-346 2.09e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.18  E-value: 2.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 182
Cdd:COG1196   257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE-LARLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 183 IVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKN 262
Cdd:COG1196   336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 263 LEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQ 342
Cdd:COG1196   416 LERLEEELEEL-EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494


                  ....
gi 1370462251 343 VIRQ 346
Cdd:COG1196   495 LLLE 498
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 103-346 2.09e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.18  E-value: 2.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 182
Cdd:COG1196   257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE-LARLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 183 IVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKN 262
Cdd:COG1196   336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 263 LEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQ 342
Cdd:COG1196   416 LERLEEELEEL-EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494


                  ....
gi 1370462251 343 VIRQ 346
Cdd:COG1196   495 LLLE 498
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 103-346 1.93e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.06  E-value: 1.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKhnvlekgfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 182
Cdd:TIGR02168  688 ELEEKIAELEKALAELRKELEELEEELEQLRKE--------LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  183 IVDEYKHQRLLEMLDTEKELLKEKIK--EALIQQSQEQKEILEKCLEEERQrnkealvsaaklEKEAVKDAVLKVVEEER 260
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEelEAQIEQLKEELKALREALDELRA------------ELTLLNEEAANLRERLE 827

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  261 KNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKaVEEAVKRTRDELIEYIKEQKRL 340
Cdd:TIGR02168  828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELREL 906


                   ....*.
gi 1370462251  341 DQVIRQ 346
Cdd:TIGR02168  907 ESKRSE 912
PTZ00121 PTZ00121
MAEBL; Provisional
 116-341 6.34e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.60  E-value: 6.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  116 KVSEEEKQRIKQDVESL--MEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKHQRLL 193
Cdd:PTZ00121  1570 KKAEEDKNMALRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  194 EMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEEREL 273
Cdd:PTZ00121  1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370462251  274 WKTEHAKDQE----KVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEK--AVEEAVKRtRDELIEYIKEQKRLD 341
Cdd:PTZ00121  1730 IKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKeaVIEEELDE-EDEKRRMEVDKKIKD 1802
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 113-375 4.03e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.50  E-value: 4.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 113 IKLKVSEEEKQRIKQ-DVESLMEKHNVLEKGFLKEKEQEAISFQD----RYKELQEKHKQ--------ELEDMRKAGHEA 179
Cdd:pfam17380 353 IRQEERKRELERIRQeEIAMEISRMRELERLQMERQQKNERVRQEleaaRKVKILEEERQrkiqqqkvEMEQIRAEQEEA 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 180 LSIIVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEE 259
Cdd:pfam17380 433 RQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEE 512

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 260 RKNlekahaeerelwktehaKDQEKVSQEIQKAIQEQRkisqetvKAAIIEEQKRSEKAVEEAvKRTRDELIEYIKEQKR 339
Cdd:pfam17380 513 RKR-----------------KLLEKEMEERQKAIYEEE-------RRREAEEERRKQQEMEER-RRIQEQMRKATEERSR 567

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1370462251 340 LDQVIRQRSLSSLELFLSCAQKQLSAliATEPVDIE 375
Cdd:pfam17380 568 LEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 103-346 2.09e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 59.18  E-value: 2.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 182
Cdd:COG1196   257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE-LARLEQDIARLEERRRELEERLEELEEELAELEEELEEL 335

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 183 IVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKN 262
Cdd:COG1196   336 EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER 415

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 263 LEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQ 342
Cdd:COG1196   416 LERLEEELEEL-EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494


                  ....
gi 1370462251 343 VIRQ 346
Cdd:COG1196   495 LLLE 498
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 144-373 4.78e-09

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.02  E-value: 4.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 144 LKEKEQEAISFQDRYKELQEKH---KQELEDMRKAGHEALSiivDEYKHQRLLEMLDTEKELLKEKIKEAL--IQQSQEQ 218
Cdd:COG1196   248 LEELEAELEELEAELAELEAELeelRLELEELELELEEAQA---EEYELLAELARLEQDIARLEERRRELEerLEELEEE 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 219 KEILEKCLEEERQRNKEALVSAAKLEKE-AVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQR 297
Cdd:COG1196   325 LAELEEELEELEEELEELEEELEEAEEElEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 298 KISQETVKAAIIEEQKR-------SEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQRSLSSLELFLSCAQKQLSALIATE 370
Cdd:COG1196   405 LEEAEEALLERLERLEEeleeleeALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484


                  ...
gi 1370462251 371 PVD 373
Cdd:COG1196   485 ELA 487
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 102-342 2.15e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 53.02  E-value: 2.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 102 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALS 181
Cdd:COG1196   298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE-LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 182 IIVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEkcLEEERQRNKEALVSAaklekeavkdavlkvvEEERK 261
Cdd:COG1196   377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER--LEEELEELEEALAEL----------------EEEEE 438

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 262 NLEKAhAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLD 341
Cdd:COG1196   439 EEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517


                  .
gi 1370462251 342 Q 342
Cdd:COG1196   518 G 518
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 102-314 3.48e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 52.25  E-value: 3.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 102 IQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKhnvlekgfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALS 181
Cdd:COG1196   319 EELEEELAELEEELEELEEELEELEEELEEAEEE--------LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 182 IIVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERK 261
Cdd:COG1196   391 ALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1370462251 262 NLEKAHAEERELwktEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKR 314
Cdd:COG1196   471 EAALLEAALAEL---LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 103-346 1.93e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.06  E-value: 1.93e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKhnvlekgfLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSI 182
Cdd:TIGR02168  688 ELEEKIAELEKALAELRKELEELEEELEQLRKE--------LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  183 IVDEYKHQRLLEMLDTEKELLKEKIK--EALIQQSQEQKEILEKCLEEERQrnkealvsaaklEKEAVKDAVLKVVEEER 260
Cdd:TIGR02168  760 EAEIEELEERLEEAEEELAEAEAEIEelEAQIEQLKEELKALREALDELRA------------ELTLLNEEAANLRERLE 827

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  261 KNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKaVEEAVKRTRDELIEYIKEQKRL 340
Cdd:TIGR02168  828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS-LEEALALLRSELEELSEELREL 906


                   ....*.
gi 1370462251  341 DQVIRQ 346
Cdd:TIGR02168  907 ESKRSE 912
PTZ00121 PTZ00121
MAEBL; Provisional
 116-341 6.34e-06

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.60  E-value: 6.34e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  116 KVSEEEKQRIKQDVESL--MEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKHQRLL 193
Cdd:PTZ00121  1570 KKAEEDKNMALRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  194 EMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEEREL 273
Cdd:PTZ00121  1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1370462251  274 WKTEHAKDQE----KVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEK--AVEEAVKRtRDELIEYIKEQKRLD 341
Cdd:PTZ00121  1730 IKAEEAKKEAeedkKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKeaVIEEELDE-EDEKRRMEVDKKIKD 1802
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 103-331 1.51e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.68  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKgFLKEKEQEAISFQDRYKELQEKHKQ---ELEDMRKAGHEA 179
Cdd:COG4942    31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-RIRALEQELAALEAELAELEKEIAElraELEAQKEELAEL 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 180 LSIIVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEkclEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEE 259
Cdd:COG4942   110 LRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE---ELRADLAELAALRAELEAERAELEALLAELEEE 186

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1370462251 260 RKNLEKAHAEERELwKTEHAKDQEKVSQEIQKAIQEQRKIsQETVKAAIIEEQKRSEKAVEEAVKRTRDELI 331
Cdd:COG4942   187 RAALEALKAERQKL-LARLEKELAELAAELAELQQEAEEL-EALIARLEAEAAAAAERTPAAGFAALKGKLP 256
PTZ00121 PTZ00121
MAEBL; Provisional
 112-346 3.05e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 46.29  E-value: 3.05e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  112 EIKLKVSEEEKQRIKQDVESLmEKHNVLEKGFLKEKEQEAISFQDRyKELQEKHKQELEDMRKAGHEALSIIVDEYKHQR 191
Cdd:PTZ00121  1531 EEAKKADEAKKAEEKKKADEL-KKAEELKKAEEKKKAEEAKKAEED-KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK 1608

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  192 LLEMLDTEKELLKekiKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEER 271
Cdd:PTZ00121  1609 AEEAKKAEEAKIK---AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  272 ELWKTEHAKDQE----KVSQEIQKAIQEQRKISQETVKAAIIEEQKRSE-KAVEEAVKRTRDELIEYIKEQKRLDQVIRQ 346
Cdd:PTZ00121  1686 DEKKAAEALKKEaeeaKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEaKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 157-370 3.15e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 46.08  E-value: 3.15e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 157 RYKELQEKHKQeledmrkagHEALSIIVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEI--LEKCLEEERQ--- 231
Cdd:COG1196   214 RYRELKEELKE---------LEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELeeLRLELEELELele 284

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 232 --RNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAII 309
Cdd:COG1196   285 eaQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370462251 310 EEQKRSEKAVEEAVKRTRDELIEYIKEQKRLdQVIRQRSLSSLELFLSCAQKQLSALIATE 370
Cdd:COG1196   365 EALLEAEAELAEAEEELEELAEELLEALRAA-AELAAQLEELEEAEEALLERLERLEEELE 424
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 113-375 4.03e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 45.50  E-value: 4.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 113 IKLKVSEEEKQRIKQ-DVESLMEKHNVLEKGFLKEKEQEAISFQD----RYKELQEKHKQ--------ELEDMRKAGHEA 179
Cdd:pfam17380 353 IRQEERKRELERIRQeEIAMEISRMRELERLQMERQQKNERVRQEleaaRKVKILEEERQrkiqqqkvEMEQIRAEQEEA 432

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 180 LSIIVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEE 259
Cdd:pfam17380 433 RQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEE 512

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 260 RKNlekahaeerelwktehaKDQEKVSQEIQKAIQEQRkisqetvKAAIIEEQKRSEKAVEEAvKRTRDELIEYIKEQKR 339
Cdd:pfam17380 513 RKR-----------------KLLEKEMEERQKAIYEEE-------RRREAEEERRKQQEMEER-RRIQEQMRKATEERSR 567

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 1370462251 340 LDQVIRQRSLSSLELFLSCAQKQLSAliATEPVDIE 375
Cdd:pfam17380 568 LEAMEREREMMRQIVESEKARAEYEA--TTPITTIK 601
PTZ00121 PTZ00121
MAEBL; Provisional
 105-362 5.85e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.52  E-value: 5.85e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  105 QQKISSLEIKLKVSEEEK-QRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAghealsii 183
Cdd:PTZ00121  1428 EEKKKADEAKKKAEEAKKaDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA-------- 1499

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  184 vDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNL 263
Cdd:PTZ00121  1500 -DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNM 1578

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  264 EKAHAEERElwktehaKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQV 343
Cdd:PTZ00121  1579 ALRKAEEAK-------KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651

                          250
                   ....*....|....*....
gi 1370462251  344 IRQRSLSSLELFLSCAQKQ 362
Cdd:PTZ00121  1652 LKKAEEENKIKAAEEAKKA 1670
PRK12704 PRK12704
phosphodiesterase; Provisional
 109-259 2.10e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 43.23  E-value: 2.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 109 SSLEIKLKVSEEEKQRIKQDVESLMEKHNvlekgflKEKEQEAisfQDRYKELQEKHKQELEDMRKaghealsiivdEYK 188
Cdd:PRK12704   27 KIAEAKIKEAEEEAKRILEEAKKEAEAIK-------KEALLEA---KEEIHKLRNEFEKELRERRN-----------ELQ 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 189 HQ--RLL---EMLDTEKELLKEK-----IKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEE 258
Cdd:PRK12704   86 KLekRLLqkeENLDRKLELLEKReeeleKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEE 165


                  .
gi 1370462251 259 E 259
Cdd:PRK12704  166 E 166
PTZ00121 PTZ00121
MAEBL; Provisional
 106-343 3.48e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 3.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  106 QKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKG-FLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEAlsiiV 184
Cdd:PTZ00121  1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA----A 1356

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  185 DEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQK--EILEKCLEEERQRNKEalvsAAKLEKEAVKDAVLKVVEEERKN 262
Cdd:PTZ00121  1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADE----LKKAAAAKKKADEAKKKAEEKKK 1432

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  263 LEKAHAEERELWKTEHAK---DQEKVSQEIQKAIQEQRKISQETVKAaiiEEQKRSEKAVEEA--VKRTRDELIEYIKEQ 337
Cdd:PTZ00121  1433 ADEAKKKAEEAKKADEAKkkaEEAKKAEEAKKKAEEAKKADEAKKKA---EEAKKADEAKKKAeeAKKKADEAKKAAEAK 1509


                   ....*.
gi 1370462251  338 KRLDQV 343
Cdd:PTZ00121  1510 KKADEA 1515
PTZ00121 PTZ00121
MAEBL; Provisional
 105-339 3.76e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 3.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  105 QQKISSLEIKLKVSEEEK-QRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAghEALSII 183
Cdd:PTZ00121  1375 EAKKKADAAKKKAEEKKKaDEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA--DEAKKK 1452

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  184 VDEYKHQRLLEMLDTEK---ELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEK--EAVKDAVLKVVEE 258
Cdd:PTZ00121  1453 AEEAKKAEEAKKKAEEAkkaDEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaeEAKKADEAKKAEE 1532

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  259 ERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQK 338
Cdd:PTZ00121  1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612


                   .
gi 1370462251  339 R 339
Cdd:PTZ00121  1613 K 1613
PTZ00121 PTZ00121
MAEBL; Provisional
 120-338 5.55e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 5.55e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  120 EEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAiSFQDRYKELQEKHKQELEDMRKAGHEALsiivdEYKHQRLLEMLDTE 199
Cdd:PTZ00121  1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA-RIEEVMKLYEEEKKMKAEEAKKAEEAKI-----KAEELKKAEEEKKK 1634

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  200 KELLKEKIKEALIQQSQEQKEilekclEEERQRNKEALVSAAKLEKEAVKDAvLKVVEEERKNLEKAHAEERELWKTEHA 279
Cdd:PTZ00121  1635 VEQLKKKEAEEKKKAEELKKA------EEENKIKAAEEAKKAEEDKKKAEEA-KKAEEDEKKAAEALKKEAEEAKKAEEL 1707

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1370462251  280 KDQE----KVSQEIQKAiQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQK 338
Cdd:PTZ00121  1708 KKKEaeekKKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
PTZ00121 PTZ00121
MAEBL; Provisional
 145-346 1.61e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 40.89  E-value: 1.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  145 KEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSiivDEYKHQRLLEMLDTEKELLKEKIK-EALIQQSQEQKEILE 223
Cdd:PTZ00121  1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA---DEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKAD 1332

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  224 KCLEEERQRNKEALVSAAKLEK--------EAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAK----DQEKVSQEIQK 291
Cdd:PTZ00121  1333 AAKKKAEEAKKAAEAAKAEAEAaadeaeaaEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKkkaeEDKKKADELKK 1412

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1370462251  292 AIQEQRKISQETVKAaiiEEQKRSEKAVEEAV-KRTRDELIEYIKEQKRLDQVIRQ 346
Cdd:PTZ00121  1413 AAAAKKKADEAKKKA---EEKKKADEAKKKAEeAKKADEAKKKAEEAKKAEEAKKK 1465
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
 102-325 2.70e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 39.91  E-value: 2.70e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 102 IQLQQKISSLE--------IKLKVSEEEKQRIKQDVESLMEKHNVLEKgFLKEKEQEAISFQDRYKELqEKHKQELE--- 170
Cdd:PRK05771   53 TKLSEALDKLRsylpklnpLREEKKKVSVKSLEELIKDVEEELEKIEK-EIKELEEEISELENEIKEL-EQEIERLEpwg 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 171 ----DMRKAGHEALSIIVDEYKHQRLLEMLDTEKELLKEKIKE-------ALIQQSQEQKEILEKCLEEERQRNKEALVS 239
Cdd:PRK05771  131 nfdlDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYIStdkgyvyVVVVVLKELSDEVEEELKKLGFERLELEEE 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 240 AAKLEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRkiSQETVKAAIIE---EQKRSE 316
Cdd:PRK05771  211 GTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSK--FLKTDKTFAIEgwvPEDRVK 288


                  ....*....
gi 1370462251 317 KaVEEAVKR 325
Cdd:PRK05771  289 K-LKELIDK 296
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 103-275 2.75e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.04  E-value: 2.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGF------LKEKEQEAISFQDRYKELQEKHKQ--------- 167
Cdd:TIGR02168  327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELeelesrLEELEEQLETLRSKVAQLELQIASlnneierle 406

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  168 -ELEDMRKAGHEALSIIVDEYKHQRLLEMLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAklEKE 246
Cdd:TIGR02168  407 aRLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE--REL 484

                          170       180
                   ....*....|....*....|....*....
gi 1370462251  247 AVKDAVLKVVEEERKNLEKAHAEERELWK 275
Cdd:TIGR02168  485 AQLQARLDSLERLQENLEGFSEGVKALLK 513
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 166-305 2.91e-03

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 39.81  E-value: 2.91e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 166 KQELEDMrKAGHEALSIIVDEYKHQrllemldTEKELLK-EKIKEALIQQSQEQKEILEKCLEEERQRNKEAlvsaakle 244
Cdd:PRK00409  515 KEKLNEL-IASLEELERELEQKAEE-------AEALLKEaEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQA-------- 578

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370462251 245 keavkdavlkvVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQETVK 305
Cdd:PRK00409  579 -----------IKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKK 628
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 103-371 3.36e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.65  E-value: 3.36e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKgflkekeqeaiSFQDRYKELQEkhkqeledmrkaghealsi 182
Cdd:TIGR02168  243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE-----------EIEELQKELYA------------------- 292

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  183 ivdeykHQRLLEMLDTEKELLKEKikealIQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEavKDAVLKVVEEERKN 262
Cdd:TIGR02168  293 ------LANEISRLEQQKQILRER-----LANLERQLEELEAQLEELESKLDELAEELAELEEK--LEELKEELESLEAE 359

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  263 LEKAHAEERELwkTEHAKDQEKVSQEIQKAIQEQRKisQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQ 342
Cdd:TIGR02168  360 LEELEAELEEL--ESRLEELEEQLETLRSKVAQLEL--QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435

                          250       260
                   ....*....|....*....|....*....
gi 1370462251  343 VIRQRSLSSLELFLSCAQKQLSALIATEP 371
Cdd:TIGR02168  436 KELQAELEELEEELEELQEELERLEEALE 464
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
 97-296 3.89e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.04  E-value: 3.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  97 ANVSNIQLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEKGfLKEKEQEAISFQDRYKELQEKHKQELEDMRKag 176
Cdd:COG3883    14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAE-LEALQAEIDKLQAEIAEAEAEIEERREELGE-- 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 177 healsIIVDEYKHQRLLEMLDT-----------EKELLKEKIKEA---LIQQSQEQKEILEKclEEERQRNKEALVSAAK 242
Cdd:COG3883    91 -----RARALYRSGGSVSYLDVllgsesfsdflDRLSALSKIADAdadLLEELKADKAELEA--KKAELEAKLAELEALK 163

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1370462251 243 LEKEAVKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQ 296
Cdd:COG3883   164 AELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 135-347 4.06e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.27  E-value: 4.06e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  135 KHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKhqrLLEMLDTEKELLKEKIK--EALI 212
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK---DLARLEAEVEQLEERIAqlSKEL 756

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  213 QQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAvkDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKA 292
Cdd:TIGR02168  757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQI--EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1370462251  293 IQEQRKISQETVKAAIIEEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQR 347
Cdd:TIGR02168  835 ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL 889
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
 151-346 4.21e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 38.98  E-value: 4.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 151 AISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKHQRLLEMLDTEKELLKEKIK---------EALIQQSQEQKEI 221
Cdd:COG4942    15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRaleqelaalEAELAELEKEIAE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 222 LEKCLEEERQRNKEALVSAAKLEK--------------EAVKDAVL--KVVEEERKNLEKAHAEERELWKTEHAKDQEKV 285
Cdd:COG4942    95 LRAELEAQKEELAELLRALYRLGRqpplalllspedflDAVRRLQYlkYLAPARREQAEELRADLAELAALRAELEAERA 174

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1370462251 286 SQEIQKAIQEQRKISQETVKAaiieEQKRSEKAVEEAVKRTRDELIEYIKEQKRLDQVIRQ 346
Cdd:COG4942   175 ELEALLAELEEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
103-260 4.84e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 38.98  E-value: 4.84e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251 103 QLQQKISSLEIKLKVSEEEKQRIKQDVESLMEKHNVLEK-GFLKEKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALS 181
Cdd:COG4717    92 ELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLyQELEALEAELAELPERLEELEERLEELRELEEELEELEAE 171

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1370462251 182 IIVDEYKHQRLLEMLDTEKELLKEKIKEALiQQSQEQKEILEKCLEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEER 260
Cdd:COG4717   172 LAELQEELEELLEQLSLATEEELQDLAEEL-EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEAR 249
PTZ00121 PTZ00121
MAEBL; Provisional
 114-322 5.61e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.97  E-value: 5.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  114 KLKVSEEEKQRIKQDVESLMEKHNVLEKGFLKEKEQEAISFQDRYKELQEKHKQELEDMRKA--GHEALSIIVDEYKHQR 191
Cdd:PTZ00121  1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAeeAKKAEELKKKEAEEKK 1716

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  192 LLEMLDTEKELLKEKIKEALiQQSQEQKEILEKCLEEERQRNKEA-LVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEE 270
Cdd:PTZ00121  1717 KAEELKKAEEENKIKAEEAK-KEAEEDKKKAEEAKKDEEEKKKIAhLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME 1795

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1370462251  271 RELwKTEHAKDQEKVSQEIQKAIQEQRKISQETVKAAIIEEQKRSEKAVEEA 322
Cdd:PTZ00121  1796 VDK-KIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEA 1846
PTZ00121 PTZ00121
MAEBL; Provisional
 146-342 5.66e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 38.97  E-value: 5.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  146 EKEQEAISFQDRYKELQEKHKQELEDMRKAGHEALSIIVDEYKHQRLLEMLDTEKELLKekiKEALIQQSQEQKEILEKC 225
Cdd:PTZ00121  1179 EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK---DAEEAKKAEEERNNEEIR 1255

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1370462251  226 LEEERQRNKEALVSAAKLEKEAVKDAVLKVVEEERKNLEKAHAEERElwKTEHAK---DQEKVSQEIQKAIQEQRKISQE 302
Cdd:PTZ00121  1256 KFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKK--KADEAKkkaEEAKKADEAKKKAEEAKKKADA 1333

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1370462251  303 TVKAAiiEEQKRSEKAVEEAVKRTRDELiEYIKEQKRLDQ 342
Cdd:PTZ00121  1334 AKKKA--EEAKKAAEAAKAEAEAAADEA-EAAEEKAEAAE 1370
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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