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Conserved domains on  [gi|1720391393|ref|XP_030105988|]
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serine/arginine repetitive matrix protein 2 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
cwf21_SRRM2 cd21375
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ...
39-102 1.34e-30

cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


:

Pssm-ID: 410601 [Multi-domain]  Cd Length: 64  Bit Score: 115.88  E-value: 1.34e-30
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720391393   39 EEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375      1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
309-686 1.17e-09

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 1.17e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  309 PSVEPGATNIQQPSSPAPSTKQSSSPyeDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEP 388
Cdd:PHA03307    75 PGTEAPANESRSTPTWSLSTLAPASP--AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  389 VNPSSEASPTRGCSPPKSPEKPPQSTSSES--CPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAK 466
Cdd:PHA03307   153 PAAGASPAAVASDAASSRQAALPLSSPEETarAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  467 RDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQ 546
Cdd:PHA03307   233 GASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG-SGPAPSS 311
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  547 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRS 626
Cdd:PHA03307   312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  627 pvrrrsrsrsqarrsgrsrsrtPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPAR 686
Cdd:PHA03307   392 ----------------------AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYAR 429
PHA03247 super family cl33720
large tegument protein UL36; Provisional
1982-2466 2.20e-09

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.80  E-value: 2.20e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 1982 SRSRTPLLPRKRSRSRSPLAIRRRSRSRTPraargkrsltrsPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 2061
Cdd:PHA03247  2596 ARPRAPVDDRGDPRGPAPPSPLPPDTHAPD------------PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2062 sSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSArtpmsvlqqtgGSMMDGPGPRIPDHPRSsvpenhaqsrialalTAIS 2141
Cdd:PHA03247  2664 -PRRARRLGRAAQASSPPQRPRRRAARPTVGSL-----------TSLADPPPPPPTPEPAP---------------HALV 2716
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2142 LGTARPPPSMSAAGLAARMSQVPAPVPLMslrTAPAANLASRIPAASAAAMNLASARTSAIPASvnladsrTPAAAAAMN 2221
Cdd:PHA03247  2717 SATPLPPGPAAARQASPALPAAPAPPAVP---AGPATPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRP 2786
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2222 LASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlsltgSGTPPTAANYPSSSRTPQAPTPANLVVGprsaHGTA 2301
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-----GPLPPPTSAQPTAPPPPPGPPPPSLPLG----GSVA 2857
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2302 PVNIAGSRTPAGLAPTNLSSSRMAPALSganLTSPRVPLSAydrvsgRTSPLMLDRARSRTPPSAPSQSRMTSERERAPS 2381
Cdd:PHA03247  2858 PGGDVRRRPPSRSPAAKPAAPARPPVRR---LARPAVSRST------ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2382 PASRM-VQASSQSLLPPAQDRPRSPVPS-AFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGIS--- 2456
Cdd:PHA03247  2929 PQPPPpPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSswa 3008
                          490
                   ....*....|....*
gi 1720391393 2457 -----HAEGGEPPAS 2466
Cdd:PHA03247  3009 sslalHEETDPPPVS 3023
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
2280-2690 5.32e-03

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 5.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2280 RTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRAR 2359
Cdd:PHA03307    25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREG 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2360 SRTPPSAPSqsrmTSERERAPSPASRmvqassqsllPPAQDRPRSPVPSAFSDQSRSVVQTTPVAGSQSLSSGTVAKSTS 2439
Cdd:PHA03307   105 SPTPPGPSS----PDPPPPTPPPASP----------PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2440 SASDHNGMLSGPAPGIShaeggEPPASTGAQQPSTLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEG 2519
Cdd:PHA03307   171 QAALPLSSPEETARAPS-----SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESS 245
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2520 SSLPAQPEVALKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2599
Cdd:PHA03307   246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2600 SSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDLQSSERVSWRGQRGDS 2679
Cdd:PHA03307   326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATG 405
                          410
                   ....*....|.
gi 1720391393 2680 HSPGHKRKETP 2690
Cdd:PHA03307   406 RFPAGRPRPSP 416
 
Name Accession Description Interval E-value
cwf21_SRRM2 cd21375
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ...
39-102 1.34e-30

cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410601 [Multi-domain]  Cd Length: 64  Bit Score: 115.88  E-value: 1.34e-30
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720391393   39 EEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375      1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
309-686 1.17e-09

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 1.17e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  309 PSVEPGATNIQQPSSPAPSTKQSSSPyeDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEP 388
Cdd:PHA03307    75 PGTEAPANESRSTPTWSLSTLAPASP--AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  389 VNPSSEASPTRGCSPPKSPEKPPQSTSSES--CPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAK 466
Cdd:PHA03307   153 PAAGASPAAVASDAASSRQAALPLSSPEETarAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  467 RDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQ 546
Cdd:PHA03307   233 GASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG-SGPAPSS 311
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  547 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRS 626
Cdd:PHA03307   312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  627 pvrrrsrsrsqarrsgrsrsrtPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPAR 686
Cdd:PHA03307   392 ----------------------AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYAR 429
PHA03247 PHA03247
large tegument protein UL36; Provisional
1982-2466 2.20e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.80  E-value: 2.20e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 1982 SRSRTPLLPRKRSRSRSPLAIRRRSRSRTPraargkrsltrsPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 2061
Cdd:PHA03247  2596 ARPRAPVDDRGDPRGPAPPSPLPPDTHAPD------------PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2062 sSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSArtpmsvlqqtgGSMMDGPGPRIPDHPRSsvpenhaqsrialalTAIS 2141
Cdd:PHA03247  2664 -PRRARRLGRAAQASSPPQRPRRRAARPTVGSL-----------TSLADPPPPPPTPEPAP---------------HALV 2716
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2142 LGTARPPPSMSAAGLAARMSQVPAPVPLMslrTAPAANLASRIPAASAAAMNLASARTSAIPASvnladsrTPAAAAAMN 2221
Cdd:PHA03247  2717 SATPLPPGPAAARQASPALPAAPAPPAVP---AGPATPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRP 2786
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2222 LASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlsltgSGTPPTAANYPSSSRTPQAPTPANLVVGprsaHGTA 2301
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-----GPLPPPTSAQPTAPPPPPGPPPPSLPLG----GSVA 2857
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2302 PVNIAGSRTPAGLAPTNLSSSRMAPALSganLTSPRVPLSAydrvsgRTSPLMLDRARSRTPPSAPSQSRMTSERERAPS 2381
Cdd:PHA03247  2858 PGGDVRRRPPSRSPAAKPAAPARPPVRR---LARPAVSRST------ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2382 PASRM-VQASSQSLLPPAQDRPRSPVPS-AFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGIS--- 2456
Cdd:PHA03247  2929 PQPPPpPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSswa 3008
                          490
                   ....*....|....*
gi 1720391393 2457 -----HAEGGEPPAS 2466
Cdd:PHA03247  3009 sslalHEETDPPPVS 3023
cwf21 pfam08312
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ...
58-101 1.45e-07

cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.


Pssm-ID: 462421 [Multi-domain]  Cd Length: 44  Bit Score: 49.73  E-value: 1.45e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1720391393   58 LDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
Cdd:pfam08312    1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
499-603 2.03e-05

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 49.89  E-value: 2.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  499 KRGHSRSRSPQWRRSRSAQRWgKSRSPQRRGRSRSpqRPGWSRSRNtqrrgrSRSARRGRSHSRSPATRGRSRSRTPARR 578
Cdd:TIGR01642   12 SRGRDRDRSSERPRRRSRDRS-RFRDRHRRSRERS--YREDSRPRD------RRRYDSRSPRSLRYSSVRRSRDRPRRRS 82
                           90       100
                   ....*....|....*....|....*
gi 1720391393  579 GRSRSRTPARRRSRSRTPARRRSRS 603
Cdd:TIGR01642   83 RSVRSIEQHRRRLRDRSPSNQWRKD 107
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
436-604 1.96e-03

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 42.84  E-value: 1.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  436 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 510
Cdd:pfam17069   10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  511 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 590
Cdd:pfam17069   90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160
                          170
                   ....*....|....
gi 1720391393  591 SRSRTPARRRSRSR 604
Cdd:pfam17069  161 SRSRTPFRLSEKER 174
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
2280-2690 5.32e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 5.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2280 RTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRAR 2359
Cdd:PHA03307    25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREG 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2360 SRTPPSAPSqsrmTSERERAPSPASRmvqassqsllPPAQDRPRSPVPSAFSDQSRSVVQTTPVAGSQSLSSGTVAKSTS 2439
Cdd:PHA03307   105 SPTPPGPSS----PDPPPPTPPPASP----------PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2440 SASDHNGMLSGPAPGIShaeggEPPASTGAQQPSTLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEG 2519
Cdd:PHA03307   171 QAALPLSSPEETARAPS-----SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESS 245
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2520 SSLPAQPEVALKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2599
Cdd:PHA03307   246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2600 SSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDLQSSERVSWRGQRGDS 2679
Cdd:PHA03307   326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATG 405
                          410
                   ....*....|.
gi 1720391393 2680 HSPGHKRKETP 2690
Cdd:PHA03307   406 RFPAGRPRPSP 416
 
Name Accession Description Interval E-value
cwf21_SRRM2 cd21375
cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive ...
39-102 1.34e-30

cwf21 domain found in serine/arginine repetitive matrix protein 2; Serine/arginine repetitive matrix protein 2 (SRRM2) is also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803). It is required for pre-mRNA splicing as component of the spliceosome. It contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410601 [Multi-domain]  Cd Length: 64  Bit Score: 115.88  E-value: 1.34e-30
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720391393   39 EEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21375      1 EEELRRLEAALVKKPNPDILDHERKRRVELKCLELEEMMEEQGYSEEEIQEKVATFRLMLLEKD 64
cwf21_SRRM3 cd21376
cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine ...
37-102 5.11e-23

cwf21 domain found in serine/arginine repetitive matrix protein 3 and similar proteins; Serine/arginine repetitive matrix protein 3 (SRRM3) may play a role in regulating breast cancer cell invasiveness. It may also be involved in RYBP-mediated breast cancer progression. SRRM3 contains a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410602 [Multi-domain]  Cd Length: 68  Bit Score: 94.42  E-value: 5.11e-23
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720391393   37 KGEEELRHLEAALVKRPNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21376      1 KSEEEIKKLDAALVKKPNREILDHERKRKVELKCMEMQELMEEQGYTEEEIRQKVSTFRQMLMEKE 66
cwf21_SRRM2-like cd21373
cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar ...
53-102 6.06e-17

cwf21 domain found in serine/arginine repetitive matrix proteins, SRRM2, SRRM3 and similar proteins; This subfamily includes SRRM2 and SRRM3, both of which contain a cwf21 domain at the N-terminus. SRRM2, also called 300 kDa nuclear matrix antigen, serine/arginine-rich splicing factor-related nuclear matrix protein of 300 kDa, SR-related nuclear matrix protein of 300 kDa, Ser/Arg-related nuclear matrix protein of 300 kDa, splicing coactivator subunit SRm300, or Tax-responsive enhancer element-binding protein 803 (TaxREB803), is required for pre-mRNA splicing as component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410600 [Multi-domain]  Cd Length: 50  Bit Score: 76.46  E-value: 6.06e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720391393   53 PNPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21373      1 PNKEILDHERKRKIEVKCLELEDLLEEQGYTEEEIQAKVDEYRALLLEKD 50
cwf21_CWC21-like cd21372
cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This ...
54-102 4.26e-10

cwf21 domain found in fungal complexed with CEF1 protein 21 (CWC21) and similar proteins; This subfamily includes complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. Both CWC21 and CWF21 are pre-mRNA-splicing factors that may function at or prior to the first catalytic step of splicing at the catalytic center of the spliceosome, together with ISY1. SRRM2 is required for pre-mRNA splicing as a component of the spliceosome. SRRM3 may play a role in regulating breast cancer cell invasiveness. It may be involved in RYBP-mediated breast cancer progression. Members of this family contain a cwf21 domain at the N-terminus. The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8.


Pssm-ID: 410599 [Multi-domain]  Cd Length: 49  Bit Score: 57.10  E-value: 4.26e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1720391393   54 NPDILDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKD 102
Cdd:cd21372      1 DKEILEHERKRQIELKCLELRDELEDEGLSEEEIEEKVDELREKLLKEL 49
cwf21 cd21369
cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the ...
55-101 6.38e-10

cwf21 domain; The cwf21 domain is involved in mRNA splicing; it binds directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevents its binding to Prp8. The domain is composed of two alpha helices. Proteins containing the cwf21 domain include complexed with CEF1 protein 21 (CWC21) from budding yeast, complexed with cdc5 protein 21 (CWF21) from fission yeast, as well as their orthologs, serine/arginine repetitive matrix proteins (SRRM2 and SRRM3) from vertebrates. This domain family also includes U2-associated protein SR140 from Eumetazoa, protein RRC1, and similar proteins from plants.


Pssm-ID: 410596 [Multi-domain]  Cd Length: 48  Bit Score: 56.71  E-value: 6.38e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1720391393   55 PDILDHERKRRVELRCLELEEMMEEQG-YEEQQIQEKVATFRLMLLEK 101
Cdd:cd21369      1 MDEEKRAKKREIELKVMELRDELEEQGrKPEQQIQEKVEHYRDKLLQR 48
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
309-686 1.17e-09

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 1.17e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  309 PSVEPGATNIQQPSSPAPSTKQSSSPyeDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEP 388
Cdd:PHA03307    75 PGTEAPANESRSTPTWSLSTLAPASP--AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  389 VNPSSEASPTRGCSPPKSPEKPPQSTSSES--CPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAK 466
Cdd:PHA03307   153 PAAGASPAAVASDAASSRQAALPLSSPEETarAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDA 232
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  467 RDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQ 546
Cdd:PHA03307   233 GASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG-SGPAPSS 311
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  547 RRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRS 626
Cdd:PHA03307   312 PRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRAR 391
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  627 pvrrrsrsrsqarrsgrsrsrtPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPAR 686
Cdd:PHA03307   392 ----------------------AAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYAR 429
PHA03247 PHA03247
large tegument protein UL36; Provisional
1982-2466 2.20e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 63.80  E-value: 2.20e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 1982 SRSRTPLLPRKRSRSRSPLAIRRRSRSRTPraargkrsltrsPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVAL 2061
Cdd:PHA03247  2596 ARPRAPVDDRGDPRGPAPPSPLPPDTHAPD------------PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2062 sSSRMSCFSRPSMSPTPLDRCRSPGMLEPLGSArtpmsvlqqtgGSMMDGPGPRIPDHPRSsvpenhaqsrialalTAIS 2141
Cdd:PHA03247  2664 -PRRARRLGRAAQASSPPQRPRRRAARPTVGSL-----------TSLADPPPPPPTPEPAP---------------HALV 2716
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2142 LGTARPPPSMSAAGLAARMSQVPAPVPLMslrTAPAANLASRIPAASAAAMNLASARTSAIPASvnladsrTPAAAAAMN 2221
Cdd:PHA03247  2717 SATPLPPGPAAARQASPALPAAPAPPAVP---AGPATPGGPARPARPPTTAGPPAPAPPAAPAA-------GPPRRLTRP 2786
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2222 LASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAlsltgSGTPPTAANYPSSSRTPQAPTPANLVVGprsaHGTA 2301
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPA-----GPLPPPTSAQPTAPPPPPGPPPPSLPLG----GSVA 2857
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2302 PVNIAGSRTPAGLAPTNLSSSRMAPALSganLTSPRVPLSAydrvsgRTSPLMLDRARSRTPPSAPSQSRMTSERERAPS 2381
Cdd:PHA03247  2858 PGGDVRRRPPSRSPAAKPAAPARPPVRR---LARPAVSRST------ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2382 PASRM-VQASSQSLLPPAQDRPRSPVPS-AFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGIS--- 2456
Cdd:PHA03247  2929 PQPPPpPPPRPQPPLAPTTDPAGAGEPSgAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSswa 3008
                          490
                   ....*....|....*
gi 1720391393 2457 -----HAEGGEPPAS 2466
Cdd:PHA03247  3009 sslalHEETDPPPVS 3023
cwf21 pfam08312
cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a ...
58-101 1.45e-07

cwf21 domain; The cwf21 family is involved in mRNA splicing. It has been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe. The function of the cwf21 domain is to bind directly to the spliceosomal protein Prp8. Mutations in the cwf21 domain prevent Prp8 from binding. The structure of this domain has recently been solved which shows this domain to be composed of two alpha helices.


Pssm-ID: 462421 [Multi-domain]  Cd Length: 44  Bit Score: 49.73  E-value: 1.45e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....
gi 1720391393   58 LDHERKRRVELRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEK 101
Cdd:pfam08312    1 LEHERKREIEVKVLELRDELEEQGLSEEEIEEKVDELRKKLLAE 44
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
2147-2405 4.23e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 52.54  E-value: 4.23e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2147 PPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAI---PASVNLADSRTPAAAAAMNLA 2223
Cdd:PRK07003   360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAaaaAATRAEAPPAAPAPPATADRG 439
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2224 SPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPTPANLVVGPR-SAHGTAP 2302
Cdd:PRK07003   440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARaPAAASRE 519
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2303 VNIAGSRTPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRARS-----RTPPSAPSQSRMTSERE 2377
Cdd:PRK07003   520 DAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPaaapaAAPKPAAPRVAVQVPTP 599
                          250       260
                   ....*....|....*....|....*...
gi 1720391393 2378 RAPSPASRMVQASSQSLLPPAQDRPRSP 2405
Cdd:PRK07003   600 RARAATGDAPPNGAARAEQAAESRGAPP 627
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
294-600 1.96e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.55  E-value: 1.96e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  294 QSPPLASGHQGEGDAPSVEPGATNIQQPSSPAPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPLLVEQHV 373
Cdd:PHA03307   150 ASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAA 229
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  374 DSPRPLAAIPSSQEPvnPSSEASPTRGCSPPKSPEKPPQSTSSESCPP-SPQPTKGSRHASSSPESLKPTPAPGSRREIS 452
Cdd:PHA03307   230 DDAGASSSDSSSSES--SGCGWGPENECPLPRPAPITLPTRIWEASGWnGPSSRPGPASSSSSPRERSPSPSPSSPGSGP 307
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  453 SSPTSKNRSHGRAKRDkSHSHTPSHRAGRSRSPATKRGRSRSRTPtkrghSRSRSPQWRRSrsaqrwgkSRSPQRRGRSR 532
Cdd:PHA03307   308 APSSPRASSSSSSSRE-SSSSSTSSSSESSRGAAVSPGPSPSRSP-----SPSRPPPPADP--------SSPRKRPRPSR 373
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720391393  533 SPQRPGWSRSRNTqrrgrsrsarrGRSHSRSPATRGRSRSRTPAR-RGRSRSRTPARRRSRSRTPARRR 600
Cdd:PHA03307   374 APSSPAASAGRPT-----------RRRARAAVAGRARRRDATGRFpAGRPRPSPLDAGAASGAFYARYP 431
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
499-603 2.03e-05

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 49.89  E-value: 2.03e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  499 KRGHSRSRSPQWRRSRSAQRWgKSRSPQRRGRSRSpqRPGWSRSRNtqrrgrSRSARRGRSHSRSPATRGRSRSRTPARR 578
Cdd:TIGR01642   12 SRGRDRDRSSERPRRRSRDRS-RFRDRHRRSRERS--YREDSRPRD------RRRYDSRSPRSLRYSSVRRSRDRPRRRS 82
                           90       100
                   ....*....|....*....|....*
gi 1720391393  579 GRSRSRTPARRRSRSRTPARRRSRS 603
Cdd:TIGR01642   83 RSVRSIEQHRRRLRDRSPSNQWRKD 107
PRK12678 PRK12678
transcription termination factor Rho; Provisional
400-610 5.56e-05

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 48.75  E-value: 5.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  400 GCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRA 479
Cdd:PRK12678    62 GAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGA 141
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  480 GRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRS 559
Cdd:PRK12678   142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720391393  560 HSRSPATRGRSRSRTPARRGRSRSRTPARRR-----SRSRTPARRRSRSRTPARRG 610
Cdd:PRK12678   222 DGGDRRGRRRRRDRRDARGDDNREDRGDRDGddgegRGGRRGRRFRDRDRRGRRGG 277
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
2200-2425 3.05e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.41  E-value: 3.05e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2200 SAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAAL------SLTGSGTPPTAA 2273
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALaaarqaSARGPGGAPAPA 451
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2274 NYPSSSRTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSRMAPALSGAnltSPRVPLSAYDRVSGRTSPl 2353
Cdd:PRK12323   452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP---APAQPDAAPAGWVAESIP- 527
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720391393 2354 mldrarsRTPPSAPSQSRMTSERERAPSPASRMVQASSQSLLPPAQDRPRSPVPSAFSDQSRSVVQTTPVAG 2425
Cdd:PRK12323   528 -------DPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLPVRG 592
PRK12678 PRK12678
transcription termination factor Rho; Provisional
380-592 5.31e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 45.67  E-value: 5.31e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  380 AAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREiSSSPTSKN 459
Cdd:PRK12678    65 AAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGE-AARRGAAR 143
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  460 RSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWG-KSRSPQRRGRSRSPQRPG 538
Cdd:PRK12678   144 KAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDrRDRREQGDRREERGRRDG 223
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720391393  539 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 592
Cdd:PRK12678   224 GDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGG 277
PRK12678 PRK12678
transcription termination factor Rho; Provisional
379-604 5.45e-04

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 45.28  E-value: 5.45e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  379 LAAIPSSQEP-VNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTS 457
Cdd:PRK12678    52 IAAIKEARGGgAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERR 131
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  458 KNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRP 537
Cdd:PRK12678   132 ERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQ 211
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720391393  538 GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTpARRRSRSRTPARRRSRSR 604
Cdd:PRK12678   212 GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRG-GRRGRRFRDRDRRGRRGG 277
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
2143-2352 6.65e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.25  E-value: 6.65e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2143 GTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASRIPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNL 2222
Cdd:PRK12323   370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2223 ASPRTAVAPSAVN---LADPRTPAASAVNLAGARTPAALAALSltGSGTPP---TAANYPSSSRTPQAPTPANLVVGPRS 2296
Cdd:PRK12323   450 PAPAPAAAPAAAArpaAAGPRPVAAAAAAAPARAAPAAAPAPA--DDDPPPweeLPPEFASPAPAQPDAAPAGWVAESIP 527
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720391393 2297 AHGTAPvniagsrtPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSP 2352
Cdd:PRK12323   528 DPATAD--------PDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPD 575
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
2223-2431 1.33e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 1.33e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2223 ASPRTAVAPSAVNLADPRTPAASAVnlAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPTPANLVVGPRSAHGTAP 2302
Cdd:PRK12323   372 AGPATAAAAPVAQPAPAAAAPAAAA--PAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2303 VNIAGSRTPAGLAPTNLSSSRMAPALSgANLTSPRVPLSAYDRVSGRTSPLM-LDRARSRTPPSAPSQSRMTSERERAPS 2381
Cdd:PRK12323   450 PAPAPAAAPAAAARPAAAGPRPVAAAA-AAAPARAAPAAAPAPADDDPPPWEeLPPEFASPAPAQPDAAPAGWVAESIPD 528
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2382 PASRMVQASSQSLLPPAqdrPRSPVPSAFSDQSRSVVQTTPVAGSQSLSS 2431
Cdd:PRK12323   529 PATADPDDAFETLAPAP---AAAPAPRAAAATEPVVAPRPPRASASGLPD 575
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
511-608 1.54e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 43.75  E-value: 1.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  511 RRSRSAQRWGKSRSPQRRGRSRSPQRPGwSRSRNTQRRGRSRSARRgrshsrspatRGRSRSRTPARRGRSRSRTPaRRR 590
Cdd:TIGR01622    2 YRDRERERLRDSSSAGDRDRRRDKGRER-SRDRSRDRERSRSRRRD----------RHRDRDYYRGRERRSRSRRP-NRR 69
                           90
                   ....*....|....*...
gi 1720391393  591 SRSRTPARRRSRSRTPAR 608
Cdd:TIGR01622   70 YRPREKRRRRGDSYRRRR 87
PHA03247 PHA03247
large tegument protein UL36; Provisional
165-462 1.60e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.60e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  165 PEPPKPYSLVRETSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKK 244
Cdd:PHA03247  2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  245 RKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKI------HTTALTGQSPPLASGHQGEGDAP--SVEPGAT 316
Cdd:PHA03247  2782 RLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASpagplpPPTSAQPTAPPPPPGPPPPSLPLggSVAPGGD 2861
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  317 NIQQPSSPAPSTKQSSSPYEDKDKKEKSAVRPSPSPERSSTGPELPAPTPllveqhvDSPRPLAAIPSSQEPVNPSSeAS 396
Cdd:PHA03247  2862 VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP-------QAPPPPQPQPQPPPPPQPQP-PP 2933
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720391393  397 PTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSH 462
Cdd:PHA03247  2934 PPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
2104-2382 1.76e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.07  E-value: 1.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2104 TGGSmmdGPGPRIPDHPRSSVPENHAQSRIALALTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLRTAPAANLASR 2183
Cdd:PRK07003   363 TGGG---APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2184 IPAASAAAMNLASARTSAIPASVNLADSRTPAAAAAMNlASPRTAVAPSAVNLADPRTPAASAVNLAGARTPAALAALSL 2263
Cdd:PRK07003   440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSA-SAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASR 518
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2264 TGSGTPPTAANYPSSSRTPQAPTPANlvvgpRSAHGTAPVNI---AGSRTPAGlaptnlsSSRMAPALSGANLTSPRVPL 2340
Cdd:PRK07003   519 EDAPAAAAPPAPEARPPTPAAAAPAA-----RAGGAAAALDVlrnAGMRVSSD-------RGARAAAAAKPAAAPAAAPK 586
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 1720391393 2341 SAYDRVSGRTSPLMLDRARSRTPPSAPSQSRMTSERERAPSP 2382
Cdd:PRK07003   587 PAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPP 628
PHA03247 PHA03247
large tegument protein UL36; Provisional
162-610 1.90e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.90e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  162 QIAPEPPKPYSLVRETsssRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSK 241
Cdd:PHA03247  2572 RPAPRPSEPAVTSRAR---RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP 2648
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  242 DKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKIHTTALTGQSPPlasghqgeGDAPSVEPGATNIQQP 321
Cdd:PHA03247  2649 PERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP--------PPTPEPAPHALVSATP 2720
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  322 SSPAPSTKQSSSPyedkdkkeksAVRPSPSPERSSTGPELPAPtpllvEQHVDSPRPLAAIPSSQEPVNPSSEASPTrgc 401
Cdd:PHA03247  2721 LPPGPAAARQASP----------ALPAAPAPPAVPAGPATPGG-----PARPARPPTTAGPPAPAPPAAPAAGPPRR--- 2782
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  402 SPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHT-----PS 476
Cdd:PHA03247  2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSvapggDV 2862
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  477 HRAGRSRSPATK---RGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRS 553
Cdd:PHA03247  2863 RRRPPSRSPAAKpaaPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPP 2942
                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720391393  554 ARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPaRRRSRSRTPARRRSRSRTPARRG 610
Cdd:PHA03247  2943 LAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP-RFRVPQPAPSREAPASSTPPLTG 2998
RSRP pfam17069
Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.
436-604 1.96e-03

Arginine/Serine-Rich protein 1; RSRP1 is an eukaryotic protein family. Its function is unknown.


Pssm-ID: 293674 [Multi-domain]  Cd Length: 299  Bit Score: 42.84  E-value: 1.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  436 PESLKPTPAPGSRREISSS-PTSKNRSHGRAKRDKSHSHTPSHRAGRSRS-PATKRGRSRSRTPTKR---GHSRSRSPQW 510
Cdd:pfam17069   10 PGSPQEKKSPSTSSSGSSSrLSSRSRSRSSSRSSRSHSRSSSRFSSRSRSrPRRSRSRSRSRRRHQRkyrRYSRSYSRSR 89
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  511 RRSRSAQRWGKSRSPQRRGRSRSPQRpgwSRSRNTQRRGRSRSARRGRSHSRSpatrGRSRSRTPARRGRSRSRTpaRRR 590
Cdd:pfam17069   90 SRSRRRRYYRRSRYRYSRRYYRSPSR---SRSRSRSRSRGRSYYAIWRGSRYY----GFGRTVYPERSPRWRSRS--RTR 160
                          170
                   ....*....|....
gi 1720391393  591 SRSRTPARRRSRSR 604
Cdd:pfam17069  161 SRSRTPFRLSEKER 174
PHA03247 PHA03247
large tegument protein UL36; Provisional
2164-2613 2.10e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.10e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2164 PAPVPLMSLRTAPAANLAsriPAASAAAMNLASARTSAIPASvnlADSRTPAAAAAMNLASPRTAVAPSAVNLADP--RT 2241
Cdd:PHA03247  2557 PAAPPAAPDRSVPPPRPA---PRPSEPAVTSRARRPDAPPQS---ARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPppPS 2630
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2242 PAASAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPTPANLVVGPRSAHGTAPVNIAGS--------RTPAG 2313
Cdd:PHA03247  2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSladpppppPTPEP 2710
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2314 LAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRARSRTPPSAPSQSRMTSERERAPSPASRMVQASSQS 2393
Cdd:PHA03247  2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2394 LlppAQDRPRSPVPSAFSDQSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGISHAEGGEPPASTGAQQ-P 2472
Cdd:PHA03247  2791 L---SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRpP 2867
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2473 STLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSslPAQPEVALKRVPSPTPVPKEAIREGRPQEP 2552
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPP--PPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945
                          410       420       430       440       450       460       470
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720391393 2553 TP------------------AKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL 2613
Cdd:PHA03247  2946 TTdpagagepsgavpqpwlgALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSL 3024
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
313-444 3.42e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 42.84  E-value: 3.42e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  313 PGATNIQQPSSPAPStkQSSSPYEdkdkkEKSAVRPSPSPERSSTGPELPAPTPllVEQHVDSPRPLAAIPSSQEPVNPS 392
Cdd:PRK14971   370 SGGRGPKQHIKPVFT--QPAAAPQ-----PSAAAAASPSPSQSSAAAQPSAPQS--ATQPAGTPPTVSVDPPAAVPVNPP 440
                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720391393  393 SEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESLKPTPA 444
Cdd:PRK14971   441 STAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGT 492
PRK12678 PRK12678
transcription termination factor Rho; Provisional
359-590 4.21e-03

transcription termination factor Rho; Provisional


Pssm-ID: 237171 [Multi-domain]  Cd Length: 672  Bit Score: 42.58  E-value: 4.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  359 PELPAPTPLLVEQHVDSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPES 438
Cdd:PRK12678    68 ATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGE 147
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  439 LKPTPAPGSRREISSSPTSKNRSHGRAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQR 518
Cdd:PRK12678   148 GGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRR 227
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720391393  519 WGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARrgrshsrspatRGRSRSRTPARRGRSRSRTPARRR 590
Cdd:PRK12678   228 GRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGR-----------RFRDRDRRGRRGGDGGNEREPELR 288
PHA03247 PHA03247
large tegument protein UL36; Provisional
2043-2619 4.47e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 4.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2043 ATPPATRNHS--GSRTPPVALSSSRMSCFSRPSMSPTPlDRCRSPGmlEPLGSARTPMsvlqQTGGSMMDGPGPRIPDHP 2120
Cdd:PHA03247  2558 AAPPAAPDRSvpPPRPAPRPSEPAVTSRARRPDAPPQS-ARPRAPV--DDRGDPRGPA----PPSPLPPDTHAPDPPPPS 2630
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2121 RSSVPENHAQSRIALA------LTAISLGTARPPPSMSAAGLAARMSQVPAPVPLMSLR--TAPAANLAsRIPAASAAAM 2192
Cdd:PHA03247  2631 PSPAANEPDPHPPPTVppperpRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARptVGSLTSLA-DPPPPPPTPE 2709
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2193 NLASARTSAIPASVNLADSRTPAAAAAMNLASPRTAVAPSAVnlADPRTPAASAVNlAGARTPAALAALSLTGSGTPPTA 2272
Cdd:PHA03247  2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATP--GGPARPARPPTT-AGPPAPAPPAAPAAGPPRRLTRP 2786
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2273 ANYPSSSRTPQAPTPANLVVGPRSAHGTAPVnIAGSRTPAGLAPTNLSSSRMAPALsganltsPRVPLSAYDRVSGRTSP 2352
Cdd:PHA03247  2787 AVASLSESRESLPSPWDPADPPAAVLAPAAA-LPPAASPAGPLPPPTSAQPTAPPP-------PPGPPPPSLPLGGSVAP 2858
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2353 --LMLDRARSRTPPSAPSQSRMTSERERAPSPASRmvQASSQSLLPPAQDRPRSPVPSAfsdqsrsvvQTTPVAGSQSLS 2430
Cdd:PHA03247  2859 ggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSR--STESFALPPDQPERPPQPQAPP---------PPQPQPQPPPPP 2927
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2431 SGTVAKSTSSASDhngmlSGPAPGISHAEGGEPpasTGAQQPSTLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSS 2510
Cdd:PHA03247  2928 QPQPPPPPPPRPQ-----PPLAPTTDPAGAGEP---SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2511 GSSSSDSEGSSLPAQPEVAlkrvpsptpvpkeairegrpqePTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2590
Cdd:PHA03247  3000 SLSRVSSWASSLALHEETD----------------------PPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDP 3057
                          570       580
                   ....*....|....*....|....*....
gi 1720391393 2591 SSSSSSSSSSSSPSPAKPGPQALPKPASP 2619
Cdd:PHA03247  3058 LPPEPHDPFAHEPDPATPEAGARESPSSQ 3086
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
2280-2690 5.32e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.47  E-value: 5.32e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2280 RTPQAPTPANLVVGPRSAHGTAPVNIAGSRTPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRAR 2359
Cdd:PHA03307    25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREG 104
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2360 SRTPPSAPSqsrmTSERERAPSPASRmvqassqsllPPAQDRPRSPVPSAFSDQSRSVVQTTPVAGSQSLSSGTVAKSTS 2439
Cdd:PHA03307   105 SPTPPGPSS----PDPPPPTPPPASP----------PPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2440 SASDHNGMLSGPAPGIShaeggEPPASTGAQQPSTLAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEG 2519
Cdd:PHA03307   171 QAALPLSSPEETARAPS-----SPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESS 245
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2520 SSLPAQPEVALKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2599
Cdd:PHA03307   246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2600 SSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRQPSPQPSPRDLQSSERVSWRGQRGDS 2679
Cdd:PHA03307   326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATG 405
                          410
                   ....*....|.
gi 1720391393 2680 HSPGHKRKETP 2690
Cdd:PHA03307   406 RFPAGRPRPSP 416
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
309-462 6.09e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 42.21  E-value: 6.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  309 PSVEPGATNIQQPSSPAP--STKQSSSPYEDKDKKEKSAVRPSPSPERSST---GPELPAPTPLLV--EQHVDSPRPLAA 381
Cdd:pfam05109  449 PSSTHVPTNLTAPASTGPtvSTADVTSPTPAGTTSGASPVTPSPSPRDNGTeskAPDMTSPTSAVTtpTPNATSPTPAVT 528
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  382 IPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSESCPPSPQPTKGSRHASSSPESlkPTPAPGSRREISSSPTSKNRS 461
Cdd:pfam05109  529 TPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTT--PTPNATSPTVGETSPQANTTN 606

                   .
gi 1720391393  462 H 462
Cdd:pfam05109  607 H 607
PHA03247 PHA03247
large tegument protein UL36; Provisional
2230-2610 8.19e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 8.19e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2230 APSAVNLADPRTPAASAVNLAGARTPAALAAlslTGSGTPPTAANYPSSSRTPQAPtpanlvvgPRSAHGTAPVNIAGSR 2309
Cdd:PHA03247  2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAV---TSRARRPDAPPQSARPRAPVDD--------RGDPRGPAPPSPLPPD 2620
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2310 TPAGLAPTNLSSSRMAPALSGANLTSPRVPLSAYDRVSGRTSPLMLDRARSRTP-PSAPSQSrmtsERERAPSPASRMVQ 2388
Cdd:PHA03247  2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAqASSPPQR----PRRRAARPTVGSLT 2696
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2389 ASSQsllPPAQDRPRSPVPSAFSdqSRSVVQTTPVAGSQSLSSGTVAKSTSSASDHNGMLSGPAPGISHAEGGEPPASTG 2468
Cdd:PHA03247  2697 SLAD---PPPPPPTPEPAPHALV--SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP 2771
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393 2469 AQQPST---LAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPAQPEVALKRVPSPTPVPKEAIR 2545
Cdd:PHA03247  2772 PAAPAAgppRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720391393 2546 EGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGP 2610
Cdd:PHA03247  2852 LGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPP 2916
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
350-726 8.46e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 8.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  350 PSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEPVNPSSEASPTRGCSPPKSPEKPPQSTSSEScpPSPQPTKGS 429
Cdd:PHA03307    39 SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPT--PPGPSSPDP 116
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  430 RHASSSPESLKPTPAPGSRREISSSPTSKNRSHGRAKR-DKSHSHTPSHRAG-RSRSPATKRGRSRSRTPTKRGHSR--S 505
Cdd:PHA03307   117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAaGASPAAVASDAASsRQAALPLSSPEETARAPSSPPAEPppS 196
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  506 RSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRT 585
Cdd:PHA03307   197 TPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWN 276
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  586 PARRR---SRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSQARRSGRSRSRTPArrsgrsrsrtpa 662
Cdd:PHA03307   277 GPSSRpgpASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPG------------ 344
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720391393  663 rRGRSRSRTPARRSARSRSRTPARRGRSRSRTPARRRSRSRSLVRRGRShSRTPQRRGRSGSSS 726
Cdd:PHA03307   345 -PSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARA-AVAGRARRRDATGR 406
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
525-608 9.22e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 41.42  E-value: 9.22e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720391393  525 PQRRGRSRSPQRP-GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPA-----RRGRSRSRTPARRRSRSR-TPA 597
Cdd:TIGR01642   12 SRGRDRDRSSERPrRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRslrysSVRRSRDRPRRRSRSVRSiEQH 91
                           90
                   ....*....|.
gi 1720391393  598 RRRSRSRTPAR 608
Cdd:TIGR01642   92 RRRLRDRSPSN 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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