|
Name |
Accession |
Description |
Interval |
E-value |
| Not3 |
pfam04065 |
Not1 N-terminal domain, CCR4-Not complex component; |
131-329 |
2.98e-110 |
|
Not1 N-terminal domain, CCR4-Not complex component;
:
Pssm-ID: 461155 [Multi-domain] Cd Length: 228 Bit Score: 336.83 E-value: 2.98e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 131 LHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLA 210
Cdd:pfam04065 30 LESATNSSQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEAMERFKAVEKESKTKAFSKEGLSLA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 211 Q--KVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRkkKGDKDQKQDRIEGLKRHIEKHRYHVRMLETILR 288
Cdd:pfam04065 110 AasKLDPKEKEKAEARDWLSDSIDELNRQIEALEAEIESLQAQKK--KKKKDSEKARLEELEKLIERHKFHIEKLELILR 187
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1907179523 289 MLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDL 329
Cdd:pfam04065 188 LLENGELDPEQVDDIKEDIEYYVESNQDPDFVEDEDIYDDL 228
|
|
| NOT2_3_5 |
pfam04153 |
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
718-843 |
8.05e-56 |
|
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.
:
Pssm-ID: 461199 Cd Length: 121 Bit Score: 187.81 E-value: 8.05e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 718 AAWHHMPHPSDSERIRQYLPRNPCPTPpyhhQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 797
Cdd:pfam04153 1 YSTFNSPWPLDAERPYEPDFRNPACYP----QEPLPRLESPEKFSKFDDETLFYIFYSMPGDYAQYLAAKELKKRSWRYH 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907179523 798 TKYMMWFQRHEEPKTITDEFEQGTYIYFDYeKWGQRKKEGFTFEYR 843
Cdd:pfam04153 77 KKLRTWFTRDEEPKVITNEYERGTYIYFDY-TWEQRRKKDFTLDYE 121
|
|
| Herpes_BLLF1 super family |
cl37540 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
397-664 |
4.32e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
The actual alignment was detected with superfamily member pfam05109:
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.22 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 397 SQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPgnNGASTPAAPTSALGPKASPAPSHNSGTPapyAQAVA 476
Cdd:pfam05109 491 SPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTP--NATSPTLGKTSPTSAVTTPTPNATSPTP---AVTTP 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 477 PPNASGPSNAQPRPPSAqpSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSS------GGSSASS 550
Cdd:pfam05109 566 TPNATIPTLGKTSPTSA--VTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTtgqhniTSSSTSS 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 551 QALGPTSGPHNPAPSTSKESSTAAPsgagnvASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTL--LNGPPQFST 628
Cdd:pfam05109 644 MSLRPSSISETLSPSTSDNSTSHMP------LLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTsqASGPGNSST 717
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907179523 629 TPEikaPEPLSSLKSMAERAAIS----SGIEDPVPTLHLT 664
Cdd:pfam05109 718 STK---PGEVNVTKGTPPKNATSpqapSGQKTAVPTVTST 754
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Not3 |
pfam04065 |
Not1 N-terminal domain, CCR4-Not complex component; |
131-329 |
2.98e-110 |
|
Not1 N-terminal domain, CCR4-Not complex component;
Pssm-ID: 461155 [Multi-domain] Cd Length: 228 Bit Score: 336.83 E-value: 2.98e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 131 LHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLA 210
Cdd:pfam04065 30 LESATNSSQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEAMERFKAVEKESKTKAFSKEGLSLA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 211 Q--KVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRkkKGDKDQKQDRIEGLKRHIEKHRYHVRMLETILR 288
Cdd:pfam04065 110 AasKLDPKEKEKAEARDWLSDSIDELNRQIEALEAEIESLQAQKK--KKKKDSEKARLEELEKLIERHKFHIEKLELILR 187
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1907179523 289 MLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDL 329
Cdd:pfam04065 188 LLENGELDPEQVDDIKEDIEYYVESNQDPDFVEDEDIYDDL 228
|
|
| NOT2_3_5 |
pfam04153 |
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
718-843 |
8.05e-56 |
|
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.
Pssm-ID: 461199 Cd Length: 121 Bit Score: 187.81 E-value: 8.05e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 718 AAWHHMPHPSDSERIRQYLPRNPCPTPpyhhQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 797
Cdd:pfam04153 1 YSTFNSPWPLDAERPYEPDFRNPACYP----QEPLPRLESPEKFSKFDDETLFYIFYSMPGDYAQYLAAKELKKRSWRYH 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907179523 798 TKYMMWFQRHEEPKTITDEFEQGTYIYFDYeKWGQRKKEGFTFEYR 843
Cdd:pfam04153 77 KKLRTWFTRDEEPKVITNEYERGTYIYFDY-TWEQRRKKDFTLDYE 121
|
|
| CDC36 |
COG5601 |
General negative regulator of transcription subunit [Transcription]; |
743-846 |
4.50e-14 |
|
General negative regulator of transcription subunit [Transcription];
Pssm-ID: 227888 Cd Length: 172 Bit Score: 71.16 E-value: 4.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 743 TPPYHHQMPPPHSDTVEFYQR----LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMW--FQRHEEPKTITDE 816
Cdd:COG5601 64 LPNCYPNAPNPPIFKVNIEDMkmdnFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWltFNPGMSPATADHV 143
|
90 100 110
....*....|....*....|....*....|
gi 1907179523 817 FEQGTYIYFDYEKWGQRKKEgFTFEYRYLE 846
Cdd:COG5601 144 KERGSYVFFDPFSWSKVSLD-FLLDYKAVR 172
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
397-664 |
4.32e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.22 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 397 SQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPgnNGASTPAAPTSALGPKASPAPSHNSGTPapyAQAVA 476
Cdd:pfam05109 491 SPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTP--NATSPTLGKTSPTSAVTTPTPNATSPTP---AVTTP 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 477 PPNASGPSNAQPRPPSAqpSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSS------GGSSASS 550
Cdd:pfam05109 566 TPNATIPTLGKTSPTSA--VTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTtgqhniTSSSTSS 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 551 QALGPTSGPHNPAPSTSKESSTAAPsgagnvASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTL--LNGPPQFST 628
Cdd:pfam05109 644 MSLRPSSISETLSPSTSDNSTSHMP------LLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTsqASGPGNSST 717
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907179523 629 TPEikaPEPLSSLKSMAERAAIS----SGIEDPVPTLHLT 664
Cdd:pfam05109 718 STK---PGEVNVTKGTPPKNATSpqapSGQKTAVPTVTST 754
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
141-316 |
2.26e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 141 EKYEA---DLKKEIKKLQRLRDQIKTWVASNEIkdkrqlIENRklIETQMERFKVVERETKTKaySKEGLGLAQKVDPAQ 217
Cdd:PRK03918 158 DDYENaykNLGEVIKEIKRRIERLEKFIKRTEN------IEEL--IKEKEKELEEVLREINEI--SSELPELREELEKLE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 218 KEKEEVGQwLTNTIDTLNMQVDQFESEVESLSvqtrkkkgdkdqkqDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILV 297
Cdd:PRK03918 228 KEVKELEE-LKEEIEELEKELESLEGSKRKLE--------------EKIRELEERIEELKKEIEELEEKVKELKELKEKA 292
|
170
....*....|....*....
gi 1907179523 298 DAIRKIKDDVEYYVDSSQD 316
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELRE 311
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
442-583 |
3.48e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 442 GASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSnsgtgggagkQ 521
Cdd:PRK07764 389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPP----------P 458
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907179523 522 NGATSYSSVVADSPAEvtlsssggsSASSQALGPTSGPHNPAPSTSKESSTAAPSGAGNVAS 583
Cdd:PRK07764 459 AAAPSAQPAPAPAAAP---------EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
141-248 |
4.45e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 141 EKYEADLKKEIKKLQRLRDQIKTWVA--SNEIKD-KRQLIENRKLIETQMERFKVVERETKTkayskeglgLAQKVDPAQ 217
Cdd:TIGR04523 446 TNQDSVKELIIKNLDNTRESLETQLKvlSRSINKiKQNLEQKQKELKSKEKELKKLNEEKKE---------LEEKVKDLT 516
|
90 100 110
....*....|....*....|....*....|.
gi 1907179523 218 KEKEEvgqwLTNTIDTLNMQVDQFESEVESL 248
Cdd:TIGR04523 517 KKISS----LKEKIEKLESEKKEKESKISDL 543
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
438-591 |
8.79e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 39.63 E-value: 8.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 438 PGNNGASTPAAPTSALGpkasPAPSHNSGTPAPYAQAVAPPNASGPSnaqpRPPSAQPSGGSGGGSGGSSSNSNSGTGGG 517
Cdd:COG5164 48 AQNQGSTTPAGNTGGTR----PAGNQGATGPAQNQGGTTPAQNQGGT----RPAGNTGGTTPAGDGGATGPPDDGGATGP 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907179523 518 AGKqNGATSYSSVVADSPAEVTlsssGGSSASSQALGPT--SGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGG 591
Cdd:COG5164 120 PDD-GGSTTPPSGGSTTPPGDG----GSTPPGPGSTGPGgsTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGE 190
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Not3 |
pfam04065 |
Not1 N-terminal domain, CCR4-Not complex component; |
131-329 |
2.98e-110 |
|
Not1 N-terminal domain, CCR4-Not complex component;
Pssm-ID: 461155 [Multi-domain] Cd Length: 228 Bit Score: 336.83 E-value: 2.98e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 131 LHNAANANQKEKYEADLKKEIKKLQRLRDQIKTWVASNEIKDKRQLIENRKLIETQMERFKVVERETKTKAYSKEGLGLA 210
Cdd:pfam04065 30 LESATNSSQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIKDKKKLLENRKLIEEAMERFKAVEKESKTKAFSKEGLSLA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 211 Q--KVDPAQKEKEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRkkKGDKDQKQDRIEGLKRHIEKHRYHVRMLETILR 288
Cdd:pfam04065 110 AasKLDPKEKEKAEARDWLSDSIDELNRQIEALEAEIESLQAQKK--KKKKDSEKARLEELEKLIERHKFHIEKLELILR 187
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1907179523 289 MLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDL 329
Cdd:pfam04065 188 LLENGELDPEQVDDIKEDIEYYVESNQDPDFVEDEDIYDDL 228
|
|
| NOT2_3_5 |
pfam04153 |
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that ... |
718-843 |
8.05e-56 |
|
NOT2 / NOT3 / NOT5 family; NOT1, NOT2, NOT3, NOT4 and NOT5 form a nuclear complex that negatively regulates the basal and activated transcription of many genes. This family includes NOT2, NOT3 and NOT5.
Pssm-ID: 461199 Cd Length: 121 Bit Score: 187.81 E-value: 8.05e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 718 AAWHHMPHPSDSERIRQYLPRNPCPTPpyhhQMPPPHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFH 797
Cdd:pfam04153 1 YSTFNSPWPLDAERPYEPDFRNPACYP----QEPLPRLESPEKFSKFDDETLFYIFYSMPGDYAQYLAAKELKKRSWRYH 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907179523 798 TKYMMWFQRHEEPKTITDEFEQGTYIYFDYeKWGQRKKEGFTFEYR 843
Cdd:pfam04153 77 KKLRTWFTRDEEPKVITNEYERGTYIYFDY-TWEQRRKKDFTLDYE 121
|
|
| CDC36 |
COG5601 |
General negative regulator of transcription subunit [Transcription]; |
743-846 |
4.50e-14 |
|
General negative regulator of transcription subunit [Transcription];
Pssm-ID: 227888 Cd Length: 172 Bit Score: 71.16 E-value: 4.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 743 TPPYHHQMPPPHSDTVEFYQR----LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMW--FQRHEEPKTITDE 816
Cdd:COG5601 64 LPNCYPNAPNPPIFKVNIEDMkmdnFHDETLFYIFYSFPNDVLQEKAYDELLKRNWRFHKMLKCWltFNPGMSPATADHV 143
|
90 100 110
....*....|....*....|....*....|
gi 1907179523 817 FEQGTYIYFDYEKWGQRKKEgFTFEYRYLE 846
Cdd:COG5601 144 KERGSYVFFDPFSWSKVSLD-FLLDYKAVR 172
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
397-664 |
4.32e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.22 E-value: 4.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 397 SQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPgnNGASTPAAPTSALGPKASPAPSHNSGTPapyAQAVA 476
Cdd:pfam05109 491 SPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTP--NATSPTLGKTSPTSAVTTPTPNATSPTP---AVTTP 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 477 PPNASGPSNAQPRPPSAqpSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSS------GGSSASS 550
Cdd:pfam05109 566 TPNATIPTLGKTSPTSA--VTTPTPNATSPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTtgqhniTSSSTSS 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 551 QALGPTSGPHNPAPSTSKESSTAAPsgagnvASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTL--LNGPPQFST 628
Cdd:pfam05109 644 MSLRPSSISETLSPSTSDNSTSHMP------LLTSAHPTGGENITQVTPASTSTHHVSTSSPAPRPGTTsqASGPGNSST 717
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907179523 629 TPEikaPEPLSSLKSMAERAAIS----SGIEDPVPTLHLT 664
Cdd:pfam05109 718 STK---PGEVNVTKGTPPKNATSpqapSGQKTAVPTVTST 754
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
141-316 |
2.26e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 141 EKYEA---DLKKEIKKLQRLRDQIKTWVASNEIkdkrqlIENRklIETQMERFKVVERETKTKaySKEGLGLAQKVDPAQ 217
Cdd:PRK03918 158 DDYENaykNLGEVIKEIKRRIERLEKFIKRTEN------IEEL--IKEKEKELEEVLREINEI--SSELPELREELEKLE 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 218 KEKEEVGQwLTNTIDTLNMQVDQFESEVESLSvqtrkkkgdkdqkqDRIEGLKRHIEKHRYHVRMLETILRMLDNDSILV 297
Cdd:PRK03918 228 KEVKELEE-LKEEIEELEKELESLEGSKRKLE--------------EKIRELEERIEELKKEIEELEEKVKELKELKEKA 292
|
170
....*....|....*....
gi 1907179523 298 DAIRKIKDDVEYYVDSSQD 316
Cdd:PRK03918 293 EEYIKLSEFYEEYLDELRE 311
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
442-583 |
3.48e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 3.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 442 GASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSnsgtgggagkQ 521
Cdd:PRK07764 389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPP----------P 458
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907179523 522 NGATSYSSVVADSPAEvtlsssggsSASSQALGPTSGPHNPAPSTSKESSTAAPSGAGNVAS 583
Cdd:PRK07764 459 AAAPSAQPAPAPAAAP---------EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAAT 511
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
432-745 |
6.06e-04 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.41 E-value: 6.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 432 SALSSTPGNNGASTPAA----PTSALGPKASPAPShnsgTPAPYAQAVAPPNASGPSNAQPRPPSAqpsggsgggsggss 507
Cdd:pfam17823 117 AAASSSPSSAAQSLPAAiaalPSEAFSAPRAAACR----ANASAAPRAAIAAASAPHAASPAPRTA-------------- 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 508 snsnsGTGGGAGKQNGATSYSSVVADSPAEVTLSssggssassqalgPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGN 587
Cdd:pfam17823 179 -----ASSTTAASSTTAASSAPTTAASSAPATLT-------------PARGISTAATATGHPAAGTALAAVGNSSPAAGT 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 588 NSGGPSLLVPLPVNPPSSPTPSFseAKAAGTLLNGPPQfSTTPeikAPEPLSSLKSMAERAAISSGIEDPVPTLHLT-DR 666
Cdd:pfam17823 241 VTAAVGTVTPAALATLAAAAGTV--ASAAGTINMGDPH-ARRL---SPAKHMPSDTMARNPAAPMGAQAQGPIIQVStDQ 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 667 DIIlssTSAPPTSSQPPLQLSEVNIPLSLGVCPLGPVSLTKEQLYQQAmeeAAWHHMPHPSDSERIRQYLP-RNPCPTPP 745
Cdd:pfam17823 315 PVH---NTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTKAQAKEPS---ASPVPVLHTSMIPEVEATSPtTQPSPLLP 388
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
414-757 |
7.36e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 414 PQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPKASPAPSHNSGTPAPYA------------------QAV 475
Cdd:PHA03247 2577 PSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAAnepdphppptvppperprDDP 2656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 476 APPNASGPSNAQ--------------PRPPSA---------------QPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATS 526
Cdd:PHA03247 2657 APGRVSRPRRARrlgraaqassppqrPRRRAArptvgsltsladpppPPPTPEPAPHALVSATPLPPGPAAARQASPALP 2736
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 527 YSSVVADSPAEVTLSSSGGSSASSQAlgpTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLVPLPVNPPSSP 606
Cdd:PHA03247 2737 AAPAPPAVPAGPATPGGPARPARPPT---TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLA 2813
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 607 TPSFSEAKAAGTLLNGPPQFST-TPEIKAPEPLSSLKSM----------AERAAISSGIEDPVPTLHLTDRDIilsstsa 675
Cdd:PHA03247 2814 PAAALPPAASPAGPLPPPTSAQpTAPPPPPGPPPPSLPLggsvapggdvRRRPPSRSPAAKPAAPARPPVRRL------- 2886
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 676 pptsSQPPLQLSEVNIPLSlgvcPLGPVSLTKEQLYQQAMEEAAWHHMPhpsdserirqyLPRNPCPTPPYHHQMPPPHS 755
Cdd:PHA03247 2887 ----ARPAVSRSTESFALP----PDQPERPPQPQAPPPPQPQPQPPPPP-----------QPQPPPPPPPRPQPPLAPTT 2947
|
..
gi 1907179523 756 DT 757
Cdd:PHA03247 2948 DP 2949
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
312-593 |
1.03e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.85 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 312 DSSQDPDFEEN-EFLYDDLDLEDIPQALVATS----------PPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTE 380
Cdd:PHA03307 30 DAADDLLSGSQgQLVSDSAELAAVTVVAGAAAcdrfepptgpPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPP 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 381 NSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAPTSAL-----GP 455
Cdd:PHA03307 110 GPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETarapsSP 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 456 KASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSP 535
Cdd:PHA03307 190 PAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRI 269
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907179523 536 AEVTLSSSGGSSASSQALGPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPS 593
Cdd:PHA03307 270 WEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS 327
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
438-656 |
1.93e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.90 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 438 PGNNGASTPAAPTSALGPKASPAPSHNSGTPAPyAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGG 517
Cdd:PRK07764 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP-AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 518 AGKQNGATSYSSVVADSPAevtlsssggsSASSQALGPTSGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLVP 597
Cdd:PRK07764 671 AKAGGAAPAAPPPAPAPAA----------PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP 740
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907179523 598 LPVNPPSSPTPSFSEAKAAGTLLNGPPQFSTTPeiKAPEPLSSLKSMAERAAISSGIED 656
Cdd:PRK07764 741 LPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAA--PPPSPPSEEEEMAEDDAPSMDDED 797
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
407-766 |
3.10e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 407 PVHSNQHPQSPavpPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPkASPAPSHNSGTPAPYAQAVAPPNASGPsnA 486
Cdd:PHA03247 2694 SLTSLADPPPP---PPTPEPAPHALVSATPLPPGPAAARQASPALPAAP-APPAVPAGPATPGGPARPARPPTTAGP--P 2767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 487 QPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPST 566
Cdd:PHA03247 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 567 SKESStaapsgAGNVASGSGNNSGGPSLLVPLPVNPPSSPTpsfseakaAGTLLNGPPQFSTTPEIKAPEPLSSLKSMAE 646
Cdd:PHA03247 2848 PSLPL------GGSVAPGGDVRRRPPSRSPAAKPAAPARPP--------VRRLARPAVSRSTESFALPPDQPERPPQPQA 2913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 647 RAAISSGIEDPVPTLhltdrdiilsstsapptsSQPPLQlsevniPLSLGVCPLGPVSLTKEQLYQQAMEEAAWHHMPHP 726
Cdd:PHA03247 2914 PPPPQPQPQPPPPPQ------------------PQPPPP------PPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVP 2969
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1907179523 727 SDSERIRQylpRNPCPTPPYHHQMPPPHSDTVEFYQRLST 766
Cdd:PHA03247 2970 GRVAVPRF---RVPQPAPSREAPASSTPPLTGHSLSRVSS 3006
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
141-248 |
4.45e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.77 E-value: 4.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 141 EKYEADLKKEIKKLQRLRDQIKTWVA--SNEIKD-KRQLIENRKLIETQMERFKVVERETKTkayskeglgLAQKVDPAQ 217
Cdd:TIGR04523 446 TNQDSVKELIIKNLDNTRESLETQLKvlSRSINKiKQNLEQKQKELKSKEKELKKLNEEKKE---------LEEKVKDLT 516
|
90 100 110
....*....|....*....|....*....|.
gi 1907179523 218 KEKEEvgqwLTNTIDTLNMQVDQFESEVESL 248
Cdd:TIGR04523 517 KKISS----LKEKIEKLESEKKEKESKISDL 543
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
137-248 |
4.64e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 4.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 137 ANQKEKYEADLKKEIKKLQRLRDQIKTWVasneikdkrQLIENRKLIETQMERFKvvereTKTKAYSKEglGLAQKVDPA 216
Cdd:PRK03918 333 LEEKEERLEELKKKLKELEKRLEELEERH---------ELYEEAKAKKEELERLK-----KRLTGLTPE--KLEKELEEL 396
|
90 100 110
....*....|....*....|....*....|..
gi 1907179523 217 QKEKEEVgqwlTNTIDTLNMQVDQFESEVESL 248
Cdd:PRK03918 397 EKAKEEI----EEEISKITARIGELKKEIKEL 424
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
399-578 |
5.82e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.35 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 399 SPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPKASPAPS-------HNSGTPAPY 471
Cdd:PRK07764 600 PPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASdggdgwpAKAGGAAPA 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 472 AQAVAPPNASGPSNAQPRPPSAQPsggsgggSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSGGSSAssq 551
Cdd:PRK07764 680 APPPAPAPAAPAAPAGAAPAQPAP-------APAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP--- 749
|
170 180
....*....|....*....|....*..
gi 1907179523 552 ALGPTSGPHNPAPSTSKESSTAAPSGA 578
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAPAAAPPP 776
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
434-617 |
6.07e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.22 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 434 LSSTPGNNGASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSG 513
Cdd:PRK07003 356 LAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPAT 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 514 TGGgAGKQNGATSYSSVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPSTSK----------ESSTAAPSGAGNVAS 583
Cdd:PRK07003 436 ADR-GDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAfepapraaapSAATPAAVPDARAPA 514
|
170 180 190
....*....|....*....|....*....|....
gi 1907179523 584 GSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAG 617
Cdd:PRK07003 515 AASREDAPAAAAPPAPEARPPTPAAAAPAARAGG 548
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
439-649 |
6.85e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 40.24 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 439 GNNGASTPAAPTSALGPKASPAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGA 518
Cdd:PRK12323 367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 519 GKQNGATSYSSVVADSPAEVtlsssggssassQALGPTSGPHNPAPSTSKESSTAAPSGAGNVASgsgnNSGGPSLLVPL 598
Cdd:PRK12323 447 APAPAPAPAAAPAAAARPAA------------AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPW----EELPPEFASPA 510
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1907179523 599 PVNPPSSPTPSFSEAKAAGTLLNGPPQFSTTPEIKAPEPLSSLKSMAERAA 649
Cdd:PRK12323 511 PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVV 561
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
395-493 |
7.13e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 39.76 E-value: 7.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 395 EVSQSPAKNGSKPvhSNQHPQSP---AVPPTYPSGPPPTTSALSSTPGNNG-ASTPAAPTSALGPKASPAP-SHNSGTPA 469
Cdd:PRK14971 358 QLAQLTQKGDDAS--GGRGPKQHikpVFTQPAAAPQPSAAAAASPSPSQSSaAAQPSAPQSATQPAGTPPTvSVDPPAAV 435
|
90 100
....*....|....*....|....
gi 1907179523 470 PYAQAVAPPNASGPSNAQPRPPSA 493
Cdd:PRK14971 436 PVNPPSTAPQAVRPAQFKEEKKIP 459
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
414-593 |
7.64e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 39.83 E-value: 7.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 414 PQSPAVPPTYPSGPPPTTSALSSTPGNNGASTPAAPTSALGPKASPAP--SHNSGTPAPYAQAVAPPNASGPS--NAQPR 489
Cdd:PRK07003 385 ARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPpaTADRGDDAADGDAPVPAKANARAsaDSRCD 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 490 PPSAQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPSTSKE 569
Cdd:PRK07003 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAA 544
|
170 180 190
....*....|....*....|....*....|.
gi 1907179523 570 SSTAAPSG------AG-NVASGSGNNSGGPS 593
Cdd:PRK07003 545 RAGGAAAAldvlrnAGmRVSSDRGARAAAAA 575
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
414-753 |
8.39e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.92 E-value: 8.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 414 PQSPAVpptypsgppPTTSALSSTPGNNGA---STPAAPTSALGPKASP------APSHNSGTPApyaqAVAPPNASGPS 484
Cdd:PHA03247 2554 PLPPAA---------PPAAPDRSVPPPRPAprpSEPAVTSRARRPDAPPqsarprAPVDDRGDPR----GPAPPSPLPPD 2620
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 485 NAQPRPPSAQPSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSvVADSPAEVTLSSSGGSSASSQALGPTSG------ 558
Cdd:PHA03247 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPR-RARRLGRAAQASSPPQRPRRRAARPTVGsltsla 2699
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 559 -PHNPAPSTSKESSTAAPSGAGNVASGSGNNSGGPSLLVPLPVNPPSSPTPSFSEAKAAGTLLNGPPQFSTTPEIKAPEP 637
Cdd:PHA03247 2700 dPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 638 ---------------LSSLKSMAERAAISSGIEDPVPTLHLTDRDIILSSTSAPPTSSQPPLQLSEVNIPLSLG--VCPL 700
Cdd:PHA03247 2780 prrltrpavaslsesRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGgsVAPG 2859
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1907179523 701 GPVSltKEQLYQQAMEEAAwhHMPHPSDSERIRQYLPRN--PCPTPPYHHQMPPP 753
Cdd:PHA03247 2860 GDVR--RRPPSRSPAAKPA--APARPPVRRLARPAVSRSteSFALPPDQPERPPQ 2910
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
438-591 |
8.79e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 39.63 E-value: 8.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907179523 438 PGNNGASTPAAPTSALGpkasPAPSHNSGTPAPYAQAVAPPNASGPSnaqpRPPSAQPSGGSGGGSGGSSSNSNSGTGGG 517
Cdd:COG5164 48 AQNQGSTTPAGNTGGTR----PAGNQGATGPAQNQGGTTPAQNQGGT----RPAGNTGGTTPAGDGGATGPPDDGGATGP 119
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907179523 518 AGKqNGATSYSSVVADSPAEVTlsssGGSSASSQALGPT--SGPHNPAPSTSKESSTAAPSGAGNVASGSGNNSGG 591
Cdd:COG5164 120 PDD-GGSTTPPSGGSTTPPGDG----GSTPPGPGSTGPGgsTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGE 190
|
|
| |
