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Conserved domains on  [gi|1907199961|ref|XP_036011127|]
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anaphase-promoting complex subunit 13 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Apc13p super family cl05422
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 1-74 5.35e-22

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


The actual alignment was detected with superfamily member pfam05839:

Pssm-ID: 310437  Cd Length: 89  Bit Score: 80.70  E-value: 5.35e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907199961  1 MDSE---VQRDGRILDLIDDAWREDKLPYEDVAIPLSEL------------PEPEQDNGGTTESVKEQEMKWTDLALQGL 65
Cdd:pfam05839  1 MDSYftyVHLDAPHHDLLDDAWRKDRLPPDDVAVPMPHLqpvnpedeedvvPDPEADNGIQKETQKEQEPAWTDLALEEL 80


                 ....*....
gi 1907199961 66 HENVPPAGN 74
Cdd:pfam05839 81 MSNGPGIGG 89
 
Name Accession Description Interval E-value
Apc13p pfam05839
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 1-74 5.35e-22

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


Pssm-ID: 310437  Cd Length: 89  Bit Score: 80.70  E-value: 5.35e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907199961  1 MDSE---VQRDGRILDLIDDAWREDKLPYEDVAIPLSEL------------PEPEQDNGGTTESVKEQEMKWTDLALQGL 65
Cdd:pfam05839  1 MDSYftyVHLDAPHHDLLDDAWRKDRLPPDDVAVPMPHLqpvnpedeedvvPDPEADNGIQKETQKEQEPAWTDLALEEL 80


                 ....*....
gi 1907199961 66 HENVPPAGN 74
Cdd:pfam05839 81 MSNGPGIGG 89
 
Name Accession Description Interval E-value
Apc13p pfam05839
Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ...
 1-74 5.35e-22

Apc13p protein; The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc13p.


Pssm-ID: 310437  Cd Length: 89  Bit Score: 80.70  E-value: 5.35e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907199961  1 MDSE---VQRDGRILDLIDDAWREDKLPYEDVAIPLSEL------------PEPEQDNGGTTESVKEQEMKWTDLALQGL 65
Cdd:pfam05839  1 MDSYftyVHLDAPHHDLLDDAWRKDRLPPDDVAVPMPHLqpvnpedeedvvPDPEADNGIQKETQKEQEPAWTDLALEEL 80


                 ....*....
gi 1907199961 66 HENVPPAGN 74
Cdd:pfam05839 81 MSNGPGIGG 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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