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Conserved domains on  [gi|1907203772|ref|XP_036017850|]
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zinc finger protein 711 isoform X1 [Mus musculus]

Protein Classification

Zfx_Zfy_act and COG5048 domain-containing protein( domain architecture ID 12057209)

Zfx_Zfy_act and COG5048 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
65-412 2.21e-122

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


:

Pssm-ID: 461400  Cd Length: 328  Bit Score: 371.12  E-value: 2.21e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772  65 GLAAEVVHGPDIITETDVVtEGVIVPEAVLEADVAIEED-LEEDDGDHILTSELITETVRVPEQVFVADLVSGPD-GHLE 142
Cdd:pfam04704   1 DVVIEDVQCPDILEETDVS-EGVIIPEQVLDSEVAIEVSlDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEvGHLE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 143 HVVQDC----VSGVDSPTMVSEEVLVTNSDTETVIQAgggvpgSTVTIKTEEDDdddvKSTSEDYLMISLDDvGEKLEHM 218
Cdd:pfam04704  80 HVIHDSereiVTDALTADMVSEEVLVADCASEAVIDA------SGVPLETQDDD----KSNCEDYLMISLDD-GEKLDHI 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 219 GNTPLKIASDGSQEDVKEDAFGSEVIKVYIFKAEAEDDvEIGGTEIVTESEYSSGHSVaGVLDQS---RMQREKMVYMAV 295
Cdd:pfam04704 149 GSTPLTMSAEVEQDSSKLDGFCPEVIKVYIFKADPGED-DLGGTEDIVESEFENGHGV-LLLEQGssgRLPREKMVYMAV 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 296 KDSSQEQDDISNADISNELCMEVIIGEEEGTPL-EIPLQDCDVNKTGSPVLSPASYderrvsrryeecqapGNTFDsALE 374
Cdd:pfam04704 227 KDSQQEDEDLNVAEIADEVYMEVIVGEEDAAVAhEQQLDDSEVNKTFMPIAWAAAY---------------GNNTD-GIE 290
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1907203772 375 NRNTTAAQYLQICDSMNTNKVLKQKIKKRRRGETRQWQ 412
Cdd:pfam04704 291 NKNGTASALLHIDESASLDRLLKQKPKKKRRGESRQYQ 328
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
425-805 8.50e-06

FOG: Zn-finger [General function prediction only];


:

Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 8.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 425 TVYPCHICTKKFKSRGFLKRHMKNHPDHlmrKKYQCTDCDFTTNKKvsfhNHLESHKLINKVDKTHEFTEYTRRYREASP 504
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGE---KPSQCSYSGCDKSFS----RPLELSRHLRTHHNNPSDLNSKSLPLSNSK 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 505 LSSNKLIL----RDKEPKMHKCKYCDyetaEQGLLNRHLLAVHSKSFPHVCVEC-GKGFRHPSELKKHMR---------- 569
Cdd:COG5048   105 ASSSSLSSsssnSNDNNLLSSHSLPP----SSRDPQLPDLLSISNLRNNPLPGNnSSSVNTPQSNSLHPPlpanslskdp 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 570 ------------THTGEKPYQCQYCAFRcADQSNLKTHIKSKHgSNLPYKCEHCPQAFGDERELQRHLDLFQGHKTHQCP 637
Cdd:COG5048   181 ssnlsllissnvSTSIPSSSENSPLSSS-YSIPSSSSDQNLEN-SSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSAS 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 638 HCDHKSTNSSDLKRHIISVH------TKDFPHKCEVCDKGFHRPSELKKH--SDIH--KGRKIHQCRH--CDFKTSDPFI 705
Cdd:COG5048   259 ESPRSSLPTASSQSSSPNESdsssekGFSLPIKSKQCNISFSRSSPLTRHlrSVNHsgESLKPFSCPYslCGKLFSRNDA 338
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 706 LSGHILsVHTKDQSLKCKRCKRGFRQQNELKK-------HMKTHTGRKIYQCEY--CEYSTTDASGFKRHvISIHTKDYP 776
Cdd:COG5048   339 LKRHIL-LHTSISPAKEKLLNSSSKFSPLLNNeppqslqQYKDLKNDKKSETLSnsCIRNFKRDSNLSLH-IITHLSFRP 416
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1907203772 777 HRCEF--CKKGFRRPSEKKQHiMRHHKETLM 805
Cdd:COG5048   417 YNCKNppCSKSFNRHYNLIPH-KKIHTNHAP 446
 
Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
65-412 2.21e-122

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


Pssm-ID: 461400  Cd Length: 328  Bit Score: 371.12  E-value: 2.21e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772  65 GLAAEVVHGPDIITETDVVtEGVIVPEAVLEADVAIEED-LEEDDGDHILTSELITETVRVPEQVFVADLVSGPD-GHLE 142
Cdd:pfam04704   1 DVVIEDVQCPDILEETDVS-EGVIIPEQVLDSEVAIEVSlDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEvGHLE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 143 HVVQDC----VSGVDSPTMVSEEVLVTNSDTETVIQAgggvpgSTVTIKTEEDDdddvKSTSEDYLMISLDDvGEKLEHM 218
Cdd:pfam04704  80 HVIHDSereiVTDALTADMVSEEVLVADCASEAVIDA------SGVPLETQDDD----KSNCEDYLMISLDD-GEKLDHI 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 219 GNTPLKIASDGSQEDVKEDAFGSEVIKVYIFKAEAEDDvEIGGTEIVTESEYSSGHSVaGVLDQS---RMQREKMVYMAV 295
Cdd:pfam04704 149 GSTPLTMSAEVEQDSSKLDGFCPEVIKVYIFKADPGED-DLGGTEDIVESEFENGHGV-LLLEQGssgRLPREKMVYMAV 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 296 KDSSQEQDDISNADISNELCMEVIIGEEEGTPL-EIPLQDCDVNKTGSPVLSPASYderrvsrryeecqapGNTFDsALE 374
Cdd:pfam04704 227 KDSQQEDEDLNVAEIADEVYMEVIVGEEDAAVAhEQQLDDSEVNKTFMPIAWAAAY---------------GNNTD-GIE 290
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1907203772 375 NRNTTAAQYLQICDSMNTNKVLKQKIKKRRRGETRQWQ 412
Cdd:pfam04704 291 NKNGTASALLHIDESASLDRLLKQKPKKKRRGESRQYQ 328
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
425-805 8.50e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 8.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 425 TVYPCHICTKKFKSRGFLKRHMKNHPDHlmrKKYQCTDCDFTTNKKvsfhNHLESHKLINKVDKTHEFTEYTRRYREASP 504
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGE---KPSQCSYSGCDKSFS----RPLELSRHLRTHHNNPSDLNSKSLPLSNSK 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 505 LSSNKLIL----RDKEPKMHKCKYCDyetaEQGLLNRHLLAVHSKSFPHVCVEC-GKGFRHPSELKKHMR---------- 569
Cdd:COG5048   105 ASSSSLSSsssnSNDNNLLSSHSLPP----SSRDPQLPDLLSISNLRNNPLPGNnSSSVNTPQSNSLHPPlpanslskdp 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 570 ------------THTGEKPYQCQYCAFRcADQSNLKTHIKSKHgSNLPYKCEHCPQAFGDERELQRHLDLFQGHKTHQCP 637
Cdd:COG5048   181 ssnlsllissnvSTSIPSSSENSPLSSS-YSIPSSSSDQNLEN-SSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSAS 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 638 HCDHKSTNSSDLKRHIISVH------TKDFPHKCEVCDKGFHRPSELKKH--SDIH--KGRKIHQCRH--CDFKTSDPFI 705
Cdd:COG5048   259 ESPRSSLPTASSQSSSPNESdsssekGFSLPIKSKQCNISFSRSSPLTRHlrSVNHsgESLKPFSCPYslCGKLFSRNDA 338
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 706 LSGHILsVHTKDQSLKCKRCKRGFRQQNELKK-------HMKTHTGRKIYQCEY--CEYSTTDASGFKRHvISIHTKDYP 776
Cdd:COG5048   339 LKRHIL-LHTSISPAKEKLLNSSSKFSPLLNNeppqslqQYKDLKNDKKSETLSnsCIRNFKRDSNLSLH-IITHLSFRP 416
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1907203772 777 HRCEF--CKKGFRRPSEKKQHiMRHHKETLM 805
Cdd:COG5048   417 YNCKNppCSKSFNRHYNLIPH-KKIHTNHAP 446
zf-H2C2_2 pfam13465
Zinc-finger double domain;
563-587 2.04e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 2.04e-04
                          10        20
                  ....*....|....*....|....*
gi 1907203772 563 ELKKHMRTHTGEKPYQCQYCAFRCA 587
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
 
Name Accession Description Interval E-value
Zfx_Zfy_act pfam04704
Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in ...
65-412 2.21e-122

Zfx / Zfy transcription activation region; Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N terminal to multiple copies of a C2H2 Zinc finger (pfam00096). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain.


Pssm-ID: 461400  Cd Length: 328  Bit Score: 371.12  E-value: 2.21e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772  65 GLAAEVVHGPDIITETDVVtEGVIVPEAVLEADVAIEED-LEEDDGDHILTSELITETVRVPEQVFVADLVSGPD-GHLE 142
Cdd:pfam04704   1 DVVIEDVQCPDILEETDVS-EGVIIPEQVLDSEVAIEVSlDHCTVPDDVLTSDLISESMTMPEQVFVAELVSVPEvGHLE 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 143 HVVQDC----VSGVDSPTMVSEEVLVTNSDTETVIQAgggvpgSTVTIKTEEDDdddvKSTSEDYLMISLDDvGEKLEHM 218
Cdd:pfam04704  80 HVIHDSereiVTDALTADMVSEEVLVADCASEAVIDA------SGVPLETQDDD----KSNCEDYLMISLDD-GEKLDHI 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 219 GNTPLKIASDGSQEDVKEDAFGSEVIKVYIFKAEAEDDvEIGGTEIVTESEYSSGHSVaGVLDQS---RMQREKMVYMAV 295
Cdd:pfam04704 149 GSTPLTMSAEVEQDSSKLDGFCPEVIKVYIFKADPGED-DLGGTEDIVESEFENGHGV-LLLEQGssgRLPREKMVYMAV 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 296 KDSSQEQDDISNADISNELCMEVIIGEEEGTPL-EIPLQDCDVNKTGSPVLSPASYderrvsrryeecqapGNTFDsALE 374
Cdd:pfam04704 227 KDSQQEDEDLNVAEIADEVYMEVIVGEEDAAVAhEQQLDDSEVNKTFMPIAWAAAY---------------GNNTD-GIE 290
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1907203772 375 NRNTTAAQYLQICDSMNTNKVLKQKIKKRRRGETRQWQ 412
Cdd:pfam04704 291 NKNGTASALLHIDESASLDRLLKQKPKKKRRGESRQYQ 328
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
425-805 8.50e-06

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 48.92  E-value: 8.50e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 425 TVYPCHICTKKFKSRGFLKRHMKNHPDHlmrKKYQCTDCDFTTNKKvsfhNHLESHKLINKVDKTHEFTEYTRRYREASP 504
Cdd:COG5048    32 RPDSCPNCTDSFSRLEHLTRHIRSHTGE---KPSQCSYSGCDKSFS----RPLELSRHLRTHHNNPSDLNSKSLPLSNSK 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 505 LSSNKLIL----RDKEPKMHKCKYCDyetaEQGLLNRHLLAVHSKSFPHVCVEC-GKGFRHPSELKKHMR---------- 569
Cdd:COG5048   105 ASSSSLSSsssnSNDNNLLSSHSLPP----SSRDPQLPDLLSISNLRNNPLPGNnSSSVNTPQSNSLHPPlpanslskdp 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 570 ------------THTGEKPYQCQYCAFRcADQSNLKTHIKSKHgSNLPYKCEHCPQAFGDERELQRHLDLFQGHKTHQCP 637
Cdd:COG5048   181 ssnlsllissnvSTSIPSSSENSPLSSS-YSIPSSSSDQNLEN-SSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSAS 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 638 HCDHKSTNSSDLKRHIISVH------TKDFPHKCEVCDKGFHRPSELKKH--SDIH--KGRKIHQCRH--CDFKTSDPFI 705
Cdd:COG5048   259 ESPRSSLPTASSQSSSPNESdsssekGFSLPIKSKQCNISFSRSSPLTRHlrSVNHsgESLKPFSCPYslCGKLFSRNDA 338
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 706 LSGHILsVHTKDQSLKCKRCKRGFRQQNELKK-------HMKTHTGRKIYQCEY--CEYSTTDASGFKRHvISIHTKDYP 776
Cdd:COG5048   339 LKRHIL-LHTSISPAKEKLLNSSSKFSPLLNNeppqslqQYKDLKNDKKSETLSnsCIRNFKRDSNLSLH-IITHLSFRP 416
                         410       420       430
                  ....*....|....*....|....*....|.
gi 1907203772 777 HRCEF--CKKGFRRPSEKKQHiMRHHKETLM 805
Cdd:COG5048   417 YNCKNppCSKSFNRHYNLIPH-KKIHTNHAP 446
zf-H2C2_2 pfam13465
Zinc-finger double domain;
563-587 2.04e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 2.04e-04
                          10        20
                  ....*....|....*....|....*
gi 1907203772 563 ELKKHMRTHTGEKPYQCQYCAFRCA 587
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
734-758 2.44e-04

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 38.89  E-value: 2.44e-04
                          10        20
                  ....*....|....*....|....*
gi 1907203772 734 ELKKHMKTHTGRKIYQCEYCEYSTT 758
Cdd:pfam13465   1 NLKRHMRTHTGEKPYKCPECGKSFK 25
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
549-571 4.21e-04

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 38.05  E-value: 4.21e-04
                          10        20
                  ....*....|....*....|...
gi 1907203772 549 HVCVECGKGFRHPSELKKHMRTH 571
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
COG5236 COG5236
Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];
582-721 1.37e-03

Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only];


Pssm-ID: 227561 [Multi-domain]  Cd Length: 493  Bit Score: 41.93  E-value: 1.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 582 CAFRCADQSNLKTHIKSKHGSNLPYKCEHCPQAFGDERELQRHLDL------------FQGHKthQCPHCDHKSTNSSDL 649
Cdd:COG5236   159 CHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLrdhknggleeegFKGHP--LCIFCKIYFYDDDEL 236
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 650 KRHIISVHtkdfpHKCEVCDK-GFHRPSELKKHSDIHKG-RKIHQCrhCDFKT---------SDPFILSGHILSVHTKDQ 718
Cdd:COG5236   237 RRHCRLRH-----EACHICDMvGPIRYQYFKSYEDLEAHfRNAHYC--CTFQTcrvgkcyvfPYHTELLEHLTRFHKVNA 309

                  ...
gi 1907203772 719 SLK 721
Cdd:COG5236   310 RLS 312
zf-C2H2 pfam00096
Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two ...
427-449 4.80e-03

Zinc finger, C2H2 type; The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter.


Pssm-ID: 395048 [Multi-domain]  Cd Length: 23  Bit Score: 34.97  E-value: 4.80e-03
                          10        20
                  ....*....|....*....|...
gi 1907203772 427 YPCHICTKKFKSRGFLKRHMKNH 449
Cdd:pfam00096   1 YKCPDCGKSFSRKSNLKRHLRTH 23
COG5048 COG5048
FOG: Zn-finger [General function prediction only];
643-756 5.83e-03

FOG: Zn-finger [General function prediction only];


Pssm-ID: 227381 [Multi-domain]  Cd Length: 467  Bit Score: 40.06  E-value: 5.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907203772 643 STNSSDLKRHIISVHTKDFPHKCEVCDKGFHRPSELKKHSDIHKGRKIHQCRH--CDFKTSDPFILSGHILSVHTKDQSL 720
Cdd:COG5048    14 SVLSSTPKSTLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYsgCDKSFSRPLELSRHLRTHHNNPSDL 93
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1907203772 721 KCKRCKRGFRQQNELKKHMKTHTGRKIYQCEYCEYS 756
Cdd:COG5048    94 NSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLP 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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