|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
188-452 |
7.61e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 86.32 E-value: 7.61e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 188 LLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYRNKLLP 267
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 268 lsrnplseipgelafqQRAElidlckDHFKKAFESRPLTfITAQLDFAKICSLNGEYQNVEEIYNnllRLEDIRPENKQA 347
Cdd:COG2956 93 ----------------DRAE------ELLEKLLELDPDD-AEALRLLAEIYEQEGDWEKAIEVLE---RLLKLGPENAHA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 348 ICLEAGLfeLRAKKSESKAITHFlegmkinynsmekkkcrdnlksvsERQLRRNPKNSKAHGVLGLMHQLDGMKREAVES 427
Cdd:COG2956 147 YCELAEL--YLEQGDYDEAIEAL------------------------EKALKLDPDCARALLLLAELYLEQGDYEEAIAA 200
|
250 260
....*....|....*....|....*
gi 1952584666 428 FEKALELDPDNEEYLSALCELRLSL 452
Cdd:COG2956 201 LERALEQDPDYLPALPRLAELYEKL 225
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
118-257 |
8.34e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 89.28 E-value: 8.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 118 ANQYYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFSgtpesrtptQSMKQFRRVLELDPDHGEAMVLLALKLQQSN 197
Cdd:COG3914 90 ALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLE---------EALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 198 QSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQI 257
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNL 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
104-263 |
2.21e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 84.29 E-value: 2.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 104 PEVYGEKGWSLLKSANqyYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFSgtpesrtptQSMKQFRRVLELDPDHG 183
Cdd:COG0457 8 AEAYNNLGLAYRRLGR--YEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---------EALADYEQALELDPDDA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 184 EAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYRN 263
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
54-291 |
2.93e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 78.12 E-value: 2.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 54 EFDKRIIITYGNYAWVYYHMGQLTEAQSYLDKLERICKQFPDAsrytamipevYGEKGWSLLKSANqyYEEAKECFKKAL 133
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA----------LYNLGLAYLRLGR--YEEALADYEQAL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 134 DKDLDNIEWNLGHAIVLYRLETFSgtpesrtptQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKS 213
Cdd:COG0457 70 ELDPDDAEALNNLGLALQALGRYE---------EALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1952584666 214 PDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYRNKLLPLSRNPLSEIPGELAFQQRAELIDL 291
Cdd:COG0457 141 PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
69-457 |
6.53e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 80.51 E-value: 6.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 69 VYYHMGQLTEAQSYLDKLERICKQFPDASRYTAMIpevygekgwsLLKsaNQYYEEAKECFKKALDKDLDN--IEWNLGH 146
Cdd:TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASI----------QLR--LGRVDEAIATLSPALGLDPDDpaALSLLGE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 147 AIVlyrletfsgtpESRTPTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKF 226
Cdd:TIGR02917 372 AYL-----------ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 227 YRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYRNKllplsrnplseipGELAfqqRAELidlckdHFKKAFESRPlT 306
Cdd:TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK-------------GDLA---KARE------AFEKALSIEP-D 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 307 FITAQLDFAKICSLNGEYQNVEEIYNNLLRledIRPENKQAICLEAGLFELRAKKSESKA-ITHFLEGMKINYN------ 379
Cdd:TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLT---IDPKNLRAILALAGLYLRTGNEEEAVAwLEKAAELNPQEIEpalala 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 380 -SMEKKKCRDNLKSVSERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDN--------------EEYLSA 444
Cdd:TIGR02917 575 qYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSalalllladayavmKNYAKA 654
|
410
....*....|...
gi 1952584666 445 LCELRLSLKANSD 457
Cdd:TIGR02917 655 ITSLKRALELKPD 667
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
17-247 |
1.31e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.20 E-value: 1.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 17 AKCYNHLAFVNCLQGNCEEAIQNLKEAEkflrenhedEFDKRIIITYGNYAWVYYHMGQLTEAQSYLDKLERICKQFPDA 96
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKAL---------ELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 97 srytamipevYGEKGWSLLKSANqyYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFsgtpesrtpTQSMKQFRRVL 176
Cdd:COG0457 79 ----------LNNLGLALQALGR--YEEALEDYDKALELDPDDAEALYNLGLALLELGRY---------DEAIEAYERAL 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1952584666 177 ELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIR 247
Cdd:COG0457 138 ELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALR 208
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
165-262 |
1.63e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 78.88 E-value: 1.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 165 PTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTL 244
Cdd:COG3914 94 YEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRAL 173
|
90
....*....|....*...
gi 1952584666 245 EIRPHSAFLHHQIGVCYR 262
Cdd:COG3914 174 ELDPDNAEALNNLGNALQ 191
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
124-251 |
2.60e-14 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 69.65 E-value: 2.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 124 EAKECFKKALDKDLDNIE--WNLGHAivLYRLETFsgtpesrtpTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEE 201
Cdd:COG4235 1 EAIARLRQALAANPNDAEgwLLLGRA--YLRLGRY---------DEALAAYEKALRLDPDNADALLDLAEALLAAGDTEE 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1952584666 202 AMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSA 251
Cdd:COG4235 70 AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
122-248 |
4.82e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.07 E-value: 4.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 122 YEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFSgtpesrtptQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEE 201
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLD---------EAIVLLHEALELDPDEPEARLNLGLALLKAGDYDE 90
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1952584666 202 AMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRP 248
Cdd:COG4783 91 ALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
70-256 |
7.36e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 7.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 70 YYHMGQLTEAqsyLDKLERICKQFPDAsrytamiPEVYGEKGWSLLKSANqyYEEAKECFKKALDKDLDNIEWNLGHAIV 149
Cdd:COG3914 88 LQALGRYEEA---LALYRRALALNPDN-------AEALFNLGNLLLALGR--LEEALAALRRALALNPDFAEAYLNLGEA 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 150 LYRLetfsgtpesRTPTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRL 229
Cdd:COG3914 156 LRRL---------GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQ 226
|
170 180 190
....*....|....*....|....*....|..
gi 1952584666 230 KGDVEKAVELLKKTLEIRPHSA-----FLHHQ 256
Cdd:COG3914 227 ACDWEVYDRFEELLAALARGPSelspfALLYL 258
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
122-336 |
8.34e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 71.30 E-value: 8.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 122 YEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFsgtpesrtpTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEE 201
Cdd:COG2956 58 YDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL---------DRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 202 AMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYR------------NKLLPLS 269
Cdd:COG2956 129 AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLeqgdyeeaiaalERALEQD 208
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1952584666 270 RNPLSEIPGELAFQQRAELIDLCKDHFKKAFESRPLtfITAQLDFAKICSLNGEYQNVEEIYNNLLR 336
Cdd:COG2956 209 PDYLPALPRLAELYEKLGDPEEALELLRKALELDPS--DDLLLALADLLERKEGLEAALALLERQLR 273
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
165-263 |
1.18e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 67.91 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 165 PTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTL 244
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90
....*....|....*....
gi 1952584666 245 EIRPHSAFLHHQIGVCYRN 263
Cdd:COG4783 100 KLDPEHPEAYLRLARAYRA 118
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
30-453 |
2.42e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.42 E-value: 2.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 30 QGNCEEAIQNLKEAEKFLRENHEDEFdkriiitygNYAWVYYHMGQLTEAQSYLDKLERICKQFPDASRYTAMIpevyge 109
Cdd:TIGR02917 206 LGNIELALAAYRKAIALRPNNIAVLL---------ALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALV------ 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 110 kgwsllKSANQYYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFsgtpesrtpTQSMKQFRRVLELDPDHGEAMVLL 189
Cdd:TIGR02917 271 ------DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNL---------EQAYQYLNQILKYAPNSHQARRLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 190 ALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYrnkllpLS 269
Cdd:TIGR02917 336 ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK------LS 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 270 RNPLSEipGELAFQQRAELidlcKDHFKKAFESRPLTFITAQlDFAKICSLngeyqnveeiynnLLRLEDIRPENKQAIC 349
Cdd:TIGR02917 410 QGDPSE--AIADLETAAQL----DPELGRADLLLILSYLRSG-QFDKALAA-------------AKKLEKKQPDNASLHN 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 350 LEAGLfeLRAKKSESKAITHFLEGMKINYNSM----------EKKKCRDNLKSVSERQLRRNPKNSKAHGVLGLMHQLDG 419
Cdd:TIGR02917 470 LLGAI--YLGKGDLAKAREAFEKALSIEPDFFpaaanlaridIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547
|
410 420 430
....*....|....*....|....*....|....
gi 1952584666 420 MKREAVESFEKALELDPDNEEYLSALCELRLSLK 453
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKG 581
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
176-366 |
1.10e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.72 E-value: 1.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 176 LELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHH 255
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 256 QIGVCYRNKllplsrnplseipGELafqQRAElidlckDHFKKAFESRPlTFITAQLDFAKICSLNGEYQNVEEIYNNLL 335
Cdd:COG0457 81 NLGLALQAL-------------GRY---EEAL------EDYDKALELDP-DDAEALYNLGLALLELGRYDEAIEAYERAL 137
|
170 180 190
....*....|....*....|....*....|.
gi 1952584666 336 RLEdirPENKQAICLEAGLFELRAKKSESKA 366
Cdd:COG0457 138 ELD---PDDADALYNLGIALEKLGRYEEALE 165
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
66-215 |
7.25e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.90 E-value: 7.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 66 YAWVYYHMGQLTEAQSYLDKLERICKQFPDAsrytamipevYGEKGWSLLKSANqyYEEAKECFKKALDKDLDNIEWNLG 145
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEA----------FALLGEILLQLGD--LDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 146 HAIVLYRLETFSgtpesrtptQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPD 215
Cdd:COG4783 78 LGLALLKAGDYD---------EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
104-215 |
1.64e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 1.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 104 PEVYGEKGWSLLKSANqyYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLEtfsGTPESRtptqsmKQFRRVLELDPDHG 183
Cdd:COG4235 17 AEGWLLLGRAYLRLGR--YDEALAAYEKALRLDPDNADALLDLAEALLAAG---DTEEAE------ELLERALALDPDNP 85
|
90 100 110
....*....|....*....|....*....|..
gi 1952584666 184 EAMVLLALKLQQSNQSEEAMELVEKALRKSPD 215
Cdd:COG4235 86 EALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
165-248 |
1.92e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.18 E-value: 1.92e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 165 PTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELvEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTL 244
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
|
....
gi 1952584666 245 EIRP 248
Cdd:COG3063 87 ELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
167-261 |
4.23e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.40 E-value: 4.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 167 QSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEI 246
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90
....*....|....*
gi 1952584666 247 RPHSAFLHHQIGVCY 261
Cdd:COG4235 81 DPDNPEALYLLGLAA 95
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
176-452 |
7.38e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.16 E-value: 7.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 176 LELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHH 255
Cdd:COG3914 37 LAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALF 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 256 QIGVCYRNKllplsrnplseipGELAfqqRAElidlckDHFKKAFESRPltfitaqlDFAkicslngeyqnveEIYNNLL 335
Cdd:COG3914 117 NLGNLLLAL-------------GRLE---EAL------AALRRALALNP--------DFA-------------EAYLNLG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 336 RLedirpenkqaicleaglfeLRAKKSESKAITHFlegmkinynsmekkkcrdnlksvsERQLRRNPKNSKAHGVLGLMH 415
Cdd:COG3914 154 EA-------------------LRRLGRLEEAIAAL------------------------RRALELDPDNAEALNNLGNAL 190
|
250 260 270
....*....|....*....|....*....|....*..
gi 1952584666 416 QLDGMKREAVESFEKALELDPDNEEYLSALCELRLSL 452
Cdd:COG3914 191 QDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQA 227
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
122-216 |
2.85e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 122 YEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFsgtpesrtptQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEE 201
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY----------DEAIALEKALKLDPNNAEALLNLAELLLELGDYDE 77
|
90
....*....|....*
gi 1952584666 202 AMELVEKALRKSPDL 216
Cdd:COG3063 78 ALAYLERALELDPSA 92
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
118-350 |
3.17e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 59.24 E-value: 3.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 118 ANQYYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFSGTPESRTptQSMKQFRRVLELDPDHGEAMVLLALKLQQSN 197
Cdd:COG3914 15 AALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLA--LAAGEAAAAAAALLLLAALLELAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 198 QSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYRnkllplsrnplseip 277
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR--------------- 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1952584666 278 gelAFQQRAELIdlckDHFKKAFESRPlTFITAQLDFAKICSLNGEYQNVEEIYNNLLRLediRPENKQAICL 350
Cdd:COG3914 158 ---RLGRLEEAI----AALRRALELDP-DNAEALNNLGNALQDLGRLEEAIAAYRRALEL---DPDNADAHSN 219
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
167-248 |
3.64e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 3.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 167 QSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEI 246
Cdd:COG5010 72 ESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
..
gi 1952584666 247 RP 248
Cdd:COG5010 152 SP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
184-263 |
8.51e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.04 E-value: 8.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 184 EAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYRN 263
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
166-438 |
9.11e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.79 E-value: 9.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 166 TQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLE 245
Cdd:TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 246 IRPHSAFLHhqigvcyrnkllplsrnplsEIPGELAFQQ----RAElidlckDHFKKAFESRPLTFITAQLdfAKICSLN 321
Cdd:TIGR02917 698 QHPKAALGF--------------------ELEGDLYLRQkdypAAI------QAYRKALKRAPSSQNAIKL--HRALLAS 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 322 GEYQNVEEIYNNLLRledIRPENKQAICLEAGLFElrAKKSESKAITHFlegmkinynsmekkkcrdnlksvsERQLRRN 401
Cdd:TIGR02917 750 GNTAEAVKTLEAWLK---THPNDAVLRTALAELYL--AQKDYDKAIKHY------------------------QTVVKKA 800
|
250 260 270
....*....|....*....|....*....|....*...
gi 1952584666 402 PKNSKAHGVLG-LMHQLDGMKreAVESFEKALELDPDN 438
Cdd:TIGR02917 801 PDNAVVLNNLAwLYLELKDPR--ALEYAERALKLAPNI 836
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
110-438 |
9.51e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.79 E-value: 9.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 110 KGWSLLKSANQYYEEAKEcfKKALDKDLdniewnlghAIVLYRLETfSGTPESRTPTQSMKQFRRVLELDPDHGEAMVLL 189
Cdd:TIGR02917 98 RAYLLQGKFQQVLDELPG--KTLLDDEG---------AAELLALRG-LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 190 ALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRP-HSAFLHHQIGVcyrnkllpl 268
Cdd:TIGR02917 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPnNIAVLLALATI--------- 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 269 srnplseipgeLAFQQRAELIDLCKDHFKKAFESRPLT-FITAQLDFAKicslngeyQNVEEIYNNLLRLEDIRPENKQA 347
Cdd:TIGR02917 237 -----------LIEAGEFEEAEKHADALLKKAPNSPLAhYLKALVDFQK--------KNYEDARETLQDALKSAPEYLPA 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 348 ICLeAGLFELRAKKSES---------KAITHFLEGMKINYNSMEKKKCRDNLKSVSERQLRRNPKNSKAHGVLGLMHQLD 418
Cdd:TIGR02917 298 LLL-AGASEYQLGNLEQayqylnqilKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLAL 376
|
330 340
....*....|....*....|
gi 1952584666 419 GMKREAVESFEKALELDPDN 438
Cdd:TIGR02917 377 GDFEKAAEYLAKATELDPEN 396
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
113-445 |
1.24e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 57.30 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 113 SLLKSANQYYEEAKECFKKALDK-DLDNIEwnlghAIVLYRLETFSGTpeSRTPTQSMKQFRRVLELDPDHGEAMVLLAL 191
Cdd:TIGR00990 301 SPESKADESYEEAARAFEKALDLgKLGEKE-----AIALNLRGTFKCL--KGKHLEALADLSKSIELDPRVTQSYIKRAS 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 192 KLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVcyrnkllplsrn 271
Cdd:TIGR00990 374 MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV------------ 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 272 plseipgelaFQQRAELIDLCKDHFKKAFESRPLTFITAQLdFAKICSLNGEYQNVEEIYNNLLRLEdirpENKQAICLe 351
Cdd:TIGR00990 442 ----------TQYKEGSIASSMATFRRCKKNFPEAPDVYNY-YGELLLDQNKFDEAIEKFDTAIELE----KETKPMYM- 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 352 aGLFELRAKkseSKAITHFLEgmkiNYNSMEKkkcrdnlksVSERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKA 431
Cdd:TIGR00990 506 -NVLPLINK---ALALFQWKQ----DFIEAEN---------LCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
|
330
....*....|....
gi 1952584666 432 LELDPDNEEYLSAL 445
Cdd:TIGR00990 569 AELARTEGELVQAI 582
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
20-454 |
2.17e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 20 YNHLAFVNCLQGNCEEAIQNLKEAEKFLRENHEDEFdkRIIITYgnyawvyYHMGQLTEAQSYLDKLEricKQFPDAsry 99
Cdd:TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDPELGRADL--LLILSY-------LRSGQFDKALAAAKKLE---KKQPDN--- 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 100 tamiPEVYGEKGWSLLKsaNQYYEEAKECFKKALDKDLDNiewnLGHAIVLYRLETFSGTPESrtptqSMKQFRRVLELD 179
Cdd:TIGR02917 465 ----ASLHNLLGAIYLG--KGDLAKAREAFEKALSIEPDF----FPAAANLARIDIQEGNPDD-----AIQRFEKVLTID 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 180 PDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFL------ 253
Cdd:TIGR02917 530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAwlmlgr 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 254 -------HHQIGVCYRnKLLplSRNPLSEIPGELA--FQQRAELIDLCKDHFKKAFESRPlTFITAQLDFAKICSLNGEy 324
Cdd:TIGR02917 610 aqlaagdLNKAVSSFK-KLL--ALQPDSALALLLLadAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKR- 684
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 325 qnVEEIYNNLLRLEDIRPENKQAICLEAGLFeLRAKKSESkAITHFLEGMKINYNS----------MEKKKCRDNLKsVS 394
Cdd:TIGR02917 685 --TESAKKIAKSLQKQHPKAALGFELEGDLY-LRQKDYPA-AIQAYRKALKRAPSSqnaiklhralLASGNTAEAVK-TL 759
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 395 ERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDNEEYLSALCELRLSLKA 454
Cdd:TIGR02917 760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD 819
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
395-445 |
2.37e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 2.37e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1952584666 395 ERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDNEEYLSAL 445
Cdd:COG4235 7 RQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL 57
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
310-438 |
2.78e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.81 E-value: 2.78e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 310 AQLDFAKICSLNGEYQNVEEIYNNLLRLEdirPENKQAICLEAGLFeLRAKKSEsKAITHFLEGMKINYNS--------- 380
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELD---PDNPEAFALLGEIL-LQLGDLD-EAIVLLHEALELDPDEpearlnlgl 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1952584666 381 -MEKKKCRDNLKSVSERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDN 438
Cdd:COG4783 81 aLLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
15-250 |
3.30e-07 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 52.68 E-value: 3.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 15 YKAKCYNHLAFVNCLQGNCEEAIQNLKEAekflrenheDEFDKRIIITYGNYAWVYYHMGQLTEAQSYLDKlerickqfp 94
Cdd:TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKS---------IELDPRVTQSYIKRASMNLELGDPDKAEEDFDK--------- 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 95 dASRYTAMIPEVYGEKGWslLKSANQYYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFSgtpesrtptQSMKQFRR 174
Cdd:TIGR00990 391 -ALKLNSEDPDIYYHRAQ--LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA---------SSMATFRR 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 175 VLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKA--LRKSPD------LPHVHcYAAKFYRLKGDVEKAVELLKKTLEI 246
Cdd:TIGR00990 459 CKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAieLEKETKpmymnvLPLIN-KALALFQWKQDFIEAENLCEKALII 537
|
....
gi 1952584666 247 RPHS 250
Cdd:TIGR00990 538 DPEC 541
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
66-214 |
1.56e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 66 YAWVYYHMGQLTEAQSYLDKLERICKQFPDASRYTAMIPEVYGEKGWSLLKSANQYYEEAKECFKKALDKDLDNIEWNLG 145
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1952584666 146 HAIVLYRLETFSgtpesrtptQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSP 214
Cdd:COG5010 94 LALLYSRSGDKD---------EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
20-92 |
1.65e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 1.65e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1952584666 20 YNHLAFVNCLQGNCEEAIQNLKEAEKFLRENHEDEfDKRIIITYGNYAWVYYHMGQLTEAQSYLDKLERICKQ 92
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPD-HPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
193-264 |
1.65e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 1.65e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1952584666 193 LQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYRNK 264
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
69-245 |
2.50e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 2.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 69 VYYHMGQLTEAQSYLDKLERICkqfPDasrytamIPEVYGEKGWSLLKSANqyYEEAKECFKKALDKDLDNIEWNLGHAI 148
Cdd:COG4785 82 AYDSLGDYDLAIADFDQALELD---PD-------LAEAYNNRGLAYLLLGD--YDAALEDFDRALELDPDYAYAYLNRGI 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 149 VLYRLETFSgtpesrtptQSMKQFRRVLELDPDHGEAMVLLALkLQQSNQSEEAMELVEKALrkspdlphvhcyaAKFYR 228
Cdd:COG4785 150 ALYYLGRYE---------LAIADLEKALELDPNDPERALWLYL-AERKLDPEKALALLLEDW-------------ATAYL 206
|
170
....*....|....*..
gi 1952584666 229 LKGDVEKAVELLKKTLE 245
Cdd:COG4785 207 LQGDTEEARELFKLALA 223
|
|
| HemYx |
COG3898 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type ... |
187-254 |
2.86e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to HemY-type protoporphyrinogen oxidase) [Function unknown];
Pssm-ID: 443105 [Multi-domain] Cd Length: 468 Bit Score: 49.50 E-value: 2.86e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1952584666 187 VLL---ALKLQQSNQsEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPH----SAFLH 254
Cdd:COG3898 229 VLLtarARELEEGDP-DEARELAIEALKLAPDLVPAAVLAARLLIAQGKLRKAAKVLEKAWRAQPHpdlaAAYAE 302
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
17-142 |
5.01e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.84 E-value: 5.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 17 AKCYNHLAFVNCLQGNCEEAIQNLKEAEKFLRENHEdefdkriiiTYGNYAWVYYHMGQLTEAqsyLDKLERICKQFPDA 96
Cdd:COG3914 112 AEALFNLGNLLLALGRLEEALAALRRALALNPDFAE---------AYLNLGEALRRLGRLEEA---IAALRRALELDPDN 179
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1952584666 97 srytamiPEVYGEKGWSLLKSANqyYEEAKECFKKALDKDLDNIEW 142
Cdd:COG3914 180 -------AEALNNLGNALQDLGR--LEEAIAAYRRALELDPDNADA 216
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
301-453 |
1.05e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 48.07 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 301 ESRPLTFITAQLDFAKICSLNGEYQNVEEIYNNLLRledIRPENKQAICLEAGLFELRAKKSEskAITHFlegmkinyns 380
Cdd:COG3914 71 AAALLLLAALLELAALLLQALGRYEEALALYRRALA---LNPDNAEALFNLGNLLLALGRLEE--ALAAL---------- 135
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1952584666 381 mekkkcrdnlksvsERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDNEEYLSALCELRLSLK 453
Cdd:COG3914 136 --------------RRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG 194
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
167-299 |
1.07e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.45 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 167 QSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEI 246
Cdd:COG4785 91 LAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1952584666 247 RPHSAFLHHQIGVCYRNKLLPLSRNPLSEIPGELafQQRAELIDLCKDHFKKA 299
Cdd:COG4785 171 DPNDPERALWLYLAERKLDPEKALALLLEDWATA--YLLQGDTEEARELFKLA 221
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
35-188 |
1.75e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 35 EAIQNLKEAekfLRENHEDefdkriIITYGNYAWVYYHMGQLTEAQSYLDKLERIckqFPDAsrytamiPEVYGEKGWSL 114
Cdd:COG4235 1 EAIARLRQA---LAANPND------AEGWLLLGRAYLRLGRYDEALAAYEKALRL---DPDN-------ADALLDLAEAL 61
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1952584666 115 LKSANqyYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETFSgtpesrtptQSMKQFRRVLELDPDHGEAMVL 188
Cdd:COG4235 62 LAAGD--TEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA---------EAIAAWQKLLALLPADAPARLL 124
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
23-283 |
1.92e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 23 LAFVNCLQGNCEEAIQNLKEAekflRENHEDEFDKRIIitygnyawvyyhMGQLTEAQSYLDKLERICKQFPDASRYTAM 102
Cdd:TIGR02917 641 LADAYAVMKNYAKAITSLKRA----LELKPDNTEAQIG------------LAQLLLAAKRTESAKKIAKSLQKQHPKAAL 704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 103 IPEVygeKGWSLLKSANqyYEEAKECFKKALDKdldniEWNLGHAIVLYRLETFSGtpesRTPtQSMKQFRRVLELDPDH 182
Cdd:TIGR02917 705 GFEL---EGDLYLRQKD--YPAAIQAYRKALKR-----APSSQNAIKLHRALLASG----NTA-EAVKTLEAWLKTHPND 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 183 GEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYrLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCY- 261
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLAPNIPAILDTLGWLLv 848
|
250 260
....*....|....*....|....*.
gi 1952584666 262 ----RNKLLPLSRNPLSEIPGELAFQ 283
Cdd:TIGR02917 849 ekgeADRALPLLRKAVNIAPEAAAIR 874
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
193-264 |
2.29e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 2.29e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1952584666 193 LQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVElLKKTLEIRPHSAFLHHQIGVCYRNK 264
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
184-453 |
2.72e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.62 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 184 EAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSaflhhqigvcyrN 263
Cdd:TIGR02917 23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK------------N 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 264 KLLPLsrnplseipgeLAFqqraelIDLCKDHFKKAFESRPLTFITAQLDFAKICSLNGeyqnveeiyNNLLRLEdiRPE 343
Cdd:TIGR02917 91 QVLPL-----------LAR------AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRG---------LAYLGLG--QLE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 344 NKQAicleagLFELRAKKSESKAIThfleGMKINYNSMEKKKCRDNLKSVSErQLRRNPKNSKAHGVLGLMHQLDGMKRE 423
Cdd:TIGR02917 143 LAQK------SYEQALAIDPRSLYA----KLGLAQLALAENRFDEARALIDE-VLTADPGNVDALLLKGDLLLSLGNIEL 211
|
250 260 270
....*....|....*....|....*....|
gi 1952584666 424 AVESFEKALELDPDNEEYLSALCELRLSLK 453
Cdd:TIGR02917 212 ALAAYRKAIALRPNNIAVLLALATILIEAG 241
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
34-212 |
2.98e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.49 E-value: 2.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 34 EEAIQNLKEAEKFLRENhedefdkriIITYGNYAWVYYHMGQLTEAQSYLDKLERICKQFPDASRYTAmipEVYGEKGws 113
Cdd:COG2956 127 EKAIEVLERLLKLGPEN---------AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLA---ELYLEQG-- 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 114 llksanqYYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLETfsgtpesrtPTQSMKQFRRVLELDPDHGEAMVLLALkL 193
Cdd:COG2956 193 -------DYEEAIAALERALEQDPDYLPALPRLAELYEKLGD---------PEEALELLRKALELDPSDDLLLALADL-L 255
|
170
....*....|....*....
gi 1952584666 194 QQSNQSEEAMELVEKALRK 212
Cdd:COG2956 256 ERKEGLEAALALLERQLRR 274
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
200-457 |
3.74e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 46.13 E-value: 3.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 200 EEAMELVEKALRKSPDlPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPH-------SAFLHHQIGVcYRNKLLPLSrnp 272
Cdd:TIGR00990 144 NKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDyskalnrRANAYDGLGK-YADALLDLT--- 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 273 LSEIPGELAFQQRAELID--LCKDHFKKAFEsrplTFITAQLDFAKICSLNGEYQnveeIYNNLLRLEDIRPENKQAICL 350
Cdd:TIGR00990 219 ASCIIDGFRNEQSAQAVErlLKKFAESKAKE----ILETKPENLPSVTFVGNYLQ----SFRPKPRPAGLEDSNELDEET 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 351 EAGLFELRAKKSESKAITHFLEGMKINYNSMEKKKCRdnlksvserqlrrnPKNSKAHGVLGLMHQLDGMKREAVESFEK 430
Cdd:TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG--------------EKEAIALNLRGTFKCLKGKHLEALADLSK 356
|
250 260 270
....*....|....*....|....*....|.
gi 1952584666 431 ALELDPD-NEEYL---SALCELRLSLKANSD 457
Cdd:TIGR00990 357 SIELDPRvTQSYIkraSMNLELGDPDKAEED 387
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
350-453 |
8.23e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 44.33 E-value: 8.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 350 LEAGLFELRAKKSEsKAITHFLEGMKINYNSME----------KKKCRDNLKSVSERQLRRNPKNSKAHGVLGLMHQLDG 419
Cdd:COG2956 12 YFKGLNYLLNGQPD-KAIDLLEEALELDPETVEahlalgnlyrRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100 110
....*....|....*....|....*....|....
gi 1952584666 420 MKREAVESFEKALELDPDNEEYLSALCELRLSLK 453
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEG 124
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
116-438 |
9.82e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.07 E-value: 9.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 116 KSANQYYEEAKEC------------FKKALDKDLDNIE--WNLGHAIvlyrLETFSGTpesrtptQSMKQFRRVLELDPD 181
Cdd:TIGR02917 20 QSPEELIEAAKSYlqknkykaaiiqLKNALQKDPNDAEarFLLGKIY----LALGDYA-------AAEKELRKALSLGYP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 182 HGEAMVLLALKLQQSNQSEEAMELVEKA-LRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPhsAFLHHQIGVC 260
Cdd:TIGR02917 89 KNQVLPLLARAYLLQGKFQQVLDELPGKtLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDP--RSLYAKLGLA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 261 YrnklLPLSRNPLSEIpgelafqqrAELIDlckdhfkkafesrplTFITAQLDFAKICSLNGEYQNV-------EEIYNN 333
Cdd:TIGR02917 167 Q----LALAENRFDEA---------RALID---------------EVLTADPGNVDALLLKGDLLLSlgnielaLAAYRK 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 334 LLRLediRPENKQA------ICLEAGLFELRAKKSE-------SKAITHFLEGMkINYNSMEKKKCRDNLKSVserqLRR 400
Cdd:TIGR02917 219 AIAL---RPNNIAVllalatILIEAGEFEEAEKHADallkkapNSPLAHYLKAL-VDFQKKNYEDARETLQDA----LKS 290
|
330 340 350
....*....|....*....|....*....|....*...
gi 1952584666 401 NPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDN 438
Cdd:TIGR02917 291 APEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNS 328
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
395-445 |
1.09e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.92 E-value: 1.09e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1952584666 395 ERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDNEEYLSAL 445
Cdd:COG4235 41 EKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
20-139 |
1.11e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.10 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 20 YNHLAFVNCLQGNCEEAIQNLKEAEKFLRENHEdefdkriiiTYGNYAWVYYHMGQLTEAQSYLDKLERICKQFPDASRY 99
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPE---------ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLR 111
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1952584666 100 TAMIPEVYGEkgwsllksanqyYEEAKECFKKALDKDLDN 139
Cdd:COG4783 112 LARAYRALGR------------PDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
395-453 |
1.50e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.72 E-value: 1.50e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1952584666 395 ERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDNEEYLSALCELRLSLK 453
Cdd:COG4783 28 EKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
395-452 |
1.71e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 1.71e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1952584666 395 ERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDNEEYLSALCELRLSL 452
Cdd:COG5010 78 EQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
118-251 |
1.83e-04 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 42.71 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 118 ANQYYEEAKECFKKALDKDLDNIEWNLGHAIVLYRLetfsGTPEsrtptQSMKQFRRVLELDPDHGEAMVLLALKLQQSN 197
Cdd:TIGR02521 43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL----GELE-----KAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1952584666 198 QSEEAMELVEKALrKSPDLPHVH--------CYAAkfyrlKGDVEKAVELLKKTLEIRPHSA 251
Cdd:TIGR02521 114 KYEQAMQQFEQAI-EDPLYPQPArslenaglCALK-----AGDFDKAEKYLTRALQIDPQRP 169
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
177-264 |
2.55e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.21 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 177 ELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQ 256
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146
|
....*...
gi 1952584666 257 IGVCYRNK 264
Cdd:COG4785 147 RGIALYYL 154
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
118-250 |
2.87e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.56 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 118 ANQYYEEAKECFKKALDKDL-DNIEWNLGHAIVLYrletfsgtpESRTPTQSMKQFRRVLELDPDH--GEAMVLLALKLQ 194
Cdd:COG4700 101 ELGRYDEAIELYEEALTGIFaDDPHILLGLAQALF---------ELGRYAEALETLEKLIAKNPDFksSDAHLLYARALE 171
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1952584666 195 QSNQSEEAMELVEKALRKSPDlPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHS 250
Cdd:COG4700 172 ALGDLEAAEAELEALARRYSG-PEARYRYAKFLARQGRTAEAKELLEEILDEAKHM 226
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
173-252 |
3.60e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 42.59 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 173 RRVLELDPDHGEAMVLLALKLQ-QSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKktlEIRPHSA 251
Cdd:COG3071 74 AQALELAPEAELAVLLTRAELLlDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLP---ALRKHKA 150
|
.
gi 1952584666 252 F 252
Cdd:COG3071 151 L 151
|
|
| PRK12370 |
PRK12370 |
HilA/EilA family virulence transcriptional regulator; |
174-251 |
3.66e-04 |
|
HilA/EilA family virulence transcriptional regulator;
Pssm-ID: 237080 [Multi-domain] Cd Length: 553 Bit Score: 42.92 E-value: 3.66e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1952584666 174 RVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSA 251
Cdd:PRK12370 329 KATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
165-220 |
3.93e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 38.72 E-value: 3.93e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1952584666 165 PTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVH 220
Cdd:pfam14559 4 YAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
201-357 |
4.74e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 201 EAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHQIGVCYRNkllplsrnplseipgeL 280
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLA----------------A 64
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1952584666 281 AFQQRAElidlckDHFKKAFESRPlTFITAQLDFAKICSLNGEYQNVEEIYNNLLRLEdirPENKQAICLEAGLFEL 357
Cdd:COG4235 65 GDTEEAE------ELLERALALDP-DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL---PADAPARLLEASIAEA 131
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
395-441 |
5.69e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.99 E-value: 5.69e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1952584666 395 ERQLRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPDNEEY 441
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| Iml2-TPR_39 |
pfam10300 |
Iml2/Tetratricopeptide repeat protein 39; This is a family of proteins conserved from fungi to ... |
185-295 |
7.87e-04 |
|
Iml2/Tetratricopeptide repeat protein 39; This is a family of proteins conserved from fungi to humans, including fungal Inclusion body clearance protein Iml2 protein, animal tetratricopeptide repeat protein 39A/B/C (TT39A/B/C) and some uncharacterized proteins. Members of this family carry a tetratricopeptide repeat pfam07719 at their C terminus. This entry includes Iml2 and its paralogue-YKR018C from S. cerevisiae; Iml2 localizes to the cytoplasm and nucleus, and its expression is increased in response to DNA replication stress. It is found to be involved in lipid droplet-mediated inclusion body clearing after protein folding stress. In humans, TTC39A (also known as DEME6) is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. It is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive. TTC39B has been linked to lipid metabolism.
Pssm-ID: 463047 [Multi-domain] Cd Length: 469 Bit Score: 41.95 E-value: 7.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 185 AMVLLALKLQQSNQsEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAFLHHqigVCYRNK 264
Cdd:pfam10300 234 VRQVLGIPGGEGPL-EEAEALLLPYRKRYPNGALWLFFEARIESLKGNLDEALELFEECIESQSEWKQVHH---LCYWEL 309
|
90 100 110
....*....|....*....|....*....|.
gi 1952584666 265 LLPLSrnplseipGELAFQQRAELIDLCKDH 295
Cdd:pfam10300 310 MWCLV--------FLHNWKQAANYFLLLVKE 332
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
395-453 |
7.93e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 7.93e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1952584666 395 ERQLRRNPKNSKAHGVLGLMHQLDGMKREAVEsFEKALELDPDNEEYLSALCELRLSLK 453
Cdd:COG3063 16 EKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG 73
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
391-437 |
9.63e-04 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.99 E-value: 9.63e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1952584666 391 KSVSERQ--LRRNPKNSKAHGVLGLMHQLDGMKREAVESFEKALELDPD 437
Cdd:PRK11447 287 KAIPELQqaVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
405-438 |
1.02e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 1.02e-03
10 20 30
....*....|....*....|....*....|....
gi 1952584666 405 SKAHGVLGLMHQLDGMKREAVESFEKALELDPDN 438
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
30-136 |
1.35e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 30 QGNCEEAIQNLKEAEKFLRENHEdefdkriiiTYGNYAWVYYHMGQLTEAQSYLDKLERICKQFPDASRYTAMIPEVYGE 109
Cdd:COG5010 67 LGDFEESLALLEQALQLDPNNPE---------LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
|
90 100
....*....|....*....|....*..
gi 1952584666 110 kgwsllksanqyYEEAKECFKKALDKD 136
Cdd:COG5010 138 ------------DDEAKAALQRALGTS 152
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
184-252 |
1.69e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 40.30 E-value: 1.69e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1952584666 184 EAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHVHCYAAKFYRLKGDVEKAVELLKKTLEIRPHSAF 252
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGY 69
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
167-252 |
1.69e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.05 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 167 QSMKQFRRVLELDPDH---GEAMVLLALKLQQSNQSEEAMELVEKALRKSPD---LPHVHCYAAKFYRLKGDVEKAVELL 240
Cdd:COG1729 11 EAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYDKARATL 90
|
90
....*....|..
gi 1952584666 241 KKTLEIRPHSAF 252
Cdd:COG1729 91 EELIKKYPDSEA 102
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
405-438 |
2.03e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.50 E-value: 2.03e-03
10 20 30
....*....|....*....|....*....|....
gi 1952584666 405 SKAHGVLGLMHQLDGMKREAVESFEKALELDPDN 438
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
72-245 |
3.46e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.51 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 72 HMGQLTEAQSYLDKLERICKQFPDASRYTAMIPEVYGEkgwsLLKSANQYyEEAKECFKKALDKDLDnieWNLGHAIVLY 151
Cdd:COG3071 164 YLGLLRQAARDAEALKALWKALPRAERRDPELAAAYAR----ALIALGDH-DEAERLLREALKRQWD---PRLVRLYGRL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 152 RLETfsgtpesrtPTQSMKQFRRVLELDPDHGEAMVLLALKLQQSNQSEEAMELVEKALRKSPDlPHVHCYAAKFYRLKG 231
Cdd:COG3071 236 QGGD---------PAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLG 305
|
170
....*....|....
gi 1952584666 232 DVEKAVELLKKTLE 245
Cdd:COG3071 306 DPEEAAEHYRKALA 319
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
21-245 |
3.58e-03 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 39.90 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 21 NHLAFVNCLQGNCEEAIQNLKEAEKFLRENHEDEfDKRIIITYGNYAWVYYHMGQLTEAQSyldklerickqfpdasryt 100
Cdd:NF040586 524 NNLAVSLRLLGDYREALELDREVLRRRRRVLGPD-HPRTLLSANNLARDLRELGRYAEALD------------------- 583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 101 amipevygekgwsLLKSANQYYEEAkecFKKALDKDLDNIEWNLghAIVLYRLetfsG-TPESRTPTQS-MKQFRRVLel 178
Cdd:NF040586 584 -------------LLEEALERYREV---LGGPDHPDTLRAAKSL--AVALRRA----GrLEEALELAEDtYERYRRRF-- 639
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1952584666 179 DPDHGE---AMVLLALKLQQSNQSEEAMELVEKALRKSPDL-----PHVHCYA---AKFYRLKGDVEKAVELLKKTLE 245
Cdd:NF040586 640 GPDHPDtlaAALSLANDLRALGDADEARELAREVLDRYRRVlgedhPFTLACRnnlAVLLRALGDPEEARELAEAALE 717
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
23-142 |
4.47e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.29 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 23 LAFVNCLQGNCEEAIQNLKEAEKFLRENHEDefdkriiitYGNYAWVYYHMGQLTEAQSYLDKLERICKQFPDASRYTAM 102
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKALRLDPDNADA---------LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1952584666 103 IpevYGEKGWsllksanqyYEEAKECFKKALDKDLDNIEW 142
Cdd:COG4235 94 A---AFQQGD---------YAEAIAAWQKLLALLPADAPA 121
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
112-219 |
6.62e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.51 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1952584666 112 WSLLKSANqyYEEAKECFKKALDKD-----LDNIEWNLGHAivLYRLETFsgtpesrtpTQSMKQFRRVLELDPDH---G 183
Cdd:COG1729 1 KALLKAGD--YDEAIAAFKAFLKRYpnsplAPDALYWLGEA--YYALGDY---------DEAAEAFEKLLKRYPDSpkaP 67
|
90 100 110
....*....|....*....|....*....|....*.
gi 1952584666 184 EAMVLLALKLQQSNQSEEAMELVEKALRKSPDLPHV 219
Cdd:COG1729 68 DALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
59-134 |
6.72e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.44 E-value: 6.72e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1952584666 59 IIITYGNYAWVYYHMGQLTEAQSYLDK-LERICKQFPDASRYTAmipEVYGEKGWSLLKSANqyYEEAKECFKKALD 134
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKaLEIARRLLGPDHPLTA---TTLLNLGRLYLELGR--YEEALELLERALA 73
|
|
| |
