myocyte-specific enhancer factor 2A isoform X1 [Rattus norvegicus]
myocyte-specific enhancer factor 2( domain architecture ID 12901050)
myocyte-specific enhancer factor 2 (MEF2) is a MADS (MCM1, AGAMOUS, DEFICIENS, and SRF, serum response factor) domain transcription factor, such as human MEF2A, a transcription activator which binds specifically to the MEF2 element present in the regulatory regions of many muscle-specific genes
List of domain hits
Name | Accession | Description | Interval | E-value | |||||
MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-78 | 1.50e-39 | |||||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. : Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 137.68 E-value: 1.50e-39
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HJURP_C | pfam12347 | Holliday junction regulator protein family C-terminal repeat; Although this family is ... |
97-154 | 1.51e-15 | |||||
Holliday junction regulator protein family C-terminal repeat; Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, pfam10384, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. : Pssm-ID: 463543 Cd Length: 63 Bit Score: 70.84 E-value: 1.51e-15
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Herpes_BLLF1 super family | cl37540 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
129-380 | 1.32e-03 | |||||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. The actual alignment was detected with superfamily member pfam05109: Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 41.44 E-value: 1.32e-03
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Name | Accession | Description | Interval | E-value | |||||
MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-78 | 1.50e-39 | |||||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 137.68 E-value: 1.50e-39
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MADS | smart00432 | MADS domain; |
2-60 | 3.32e-32 | |||||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 117.27 E-value: 3.32e-32
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SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
10-57 | 2.17e-24 | |||||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 95.57 E-value: 2.17e-24
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HJURP_C | pfam12347 | Holliday junction regulator protein family C-terminal repeat; Although this family is ... |
97-154 | 1.51e-15 | |||||
Holliday junction regulator protein family C-terminal repeat; Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, pfam10384, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. Pssm-ID: 463543 Cd Length: 63 Bit Score: 70.84 E-value: 1.51e-15
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ARG80 | COG5068 | Regulator of arginine metabolism and related MADS box-containing transcription factors ... |
1-237 | 1.26e-09 | |||||
Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]; Pssm-ID: 227400 [Multi-domain] Cd Length: 412 Bit Score: 60.03 E-value: 1.26e-09
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Herpes_BLLF1 | pfam05109 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
129-380 | 1.32e-03 | |||||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 41.44 E-value: 1.32e-03
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Name | Accession | Description | Interval | E-value | |||||
MADS_MEF2_like | cd00265 | MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, ... |
2-78 | 1.50e-39 | |||||
MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238165 [Multi-domain] Cd Length: 77 Bit Score: 137.68 E-value: 1.50e-39
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MADS | smart00432 | MADS domain; |
2-60 | 3.32e-32 | |||||
MADS domain; Pssm-ID: 197721 [Multi-domain] Cd Length: 59 Bit Score: 117.27 E-value: 3.32e-32
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MADS | cd00120 | MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic ... |
2-60 | 2.00e-29 | |||||
MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238067 [Multi-domain] Cd Length: 59 Bit Score: 109.53 E-value: 2.00e-29
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MADS_SRF_like | cd00266 | SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) ... |
2-83 | 3.02e-26 | |||||
SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Pssm-ID: 238166 [Multi-domain] Cd Length: 83 Bit Score: 101.57 E-value: 3.02e-26
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SRF-TF | pfam00319 | SRF-type transcription factor (DNA-binding and dimerization domain); |
10-57 | 2.17e-24 | |||||
SRF-type transcription factor (DNA-binding and dimerization domain); Pssm-ID: 459760 [Multi-domain] Cd Length: 48 Bit Score: 95.57 E-value: 2.17e-24
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HJURP_C | pfam12347 | Holliday junction regulator protein family C-terminal repeat; Although this family is ... |
97-154 | 1.51e-15 | |||||
Holliday junction regulator protein family C-terminal repeat; Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, pfam10384, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. Pssm-ID: 463543 Cd Length: 63 Bit Score: 70.84 E-value: 1.51e-15
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ARG80 | COG5068 | Regulator of arginine metabolism and related MADS box-containing transcription factors ... |
1-237 | 1.26e-09 | |||||
Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]; Pssm-ID: 227400 [Multi-domain] Cd Length: 412 Bit Score: 60.03 E-value: 1.26e-09
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Herpes_BLLF1 | pfam05109 | Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
129-380 | 1.32e-03 | |||||
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 41.44 E-value: 1.32e-03
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Blast search parameters | ||||
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