NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1958679485|ref|XP_038949011|]
View 

primary cilium assembly protein FAM149B1 isoform X7 [Rattus norvegicus]

Protein Classification

FAM149 family protein( domain architecture ID 10576008)

FAM149 family protein is a DUF3719 domain-containing protein; similar to Homo sapiens protein FAM149B1

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3719 pfam12516
Protein of unknown function (DUF3719); This domain family is found in eukaryotes, and is ...
 114-179 2.61e-28

Protein of unknown function (DUF3719); This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved HLR sequence motif. There are two completely conserved residues (W and H) that may be functionally important.


:

Pssm-ID: 463617  Cd Length: 66  Bit Score: 104.34  E-value: 2.61e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958679485 114 LLYEQKPSVHTQSLQKECQQWASSFPHLRILGRQIITSS-EGYGLYPrSPSAVSASHEAILPQERES 179
Cdd:pfam12516   1 MLFEGKVSPQTQNLQAECQEWTRRFPHLRILGRQLIHPTdEGFQHYQ-SPAPSSASHEPLLSVENHS 66
 
Name Accession Description Interval E-value
DUF3719 pfam12516
Protein of unknown function (DUF3719); This domain family is found in eukaryotes, and is ...
 114-179 2.61e-28

Protein of unknown function (DUF3719); This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved HLR sequence motif. There are two completely conserved residues (W and H) that may be functionally important.


Pssm-ID: 463617  Cd Length: 66  Bit Score: 104.34  E-value: 2.61e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958679485 114 LLYEQKPSVHTQSLQKECQQWASSFPHLRILGRQIITSS-EGYGLYPrSPSAVSASHEAILPQERES 179
Cdd:pfam12516   1 MLFEGKVSPQTQNLQAECQEWTRRFPHLRILGRQLIHPTdEGFQHYQ-SPAPSSASHEPLLSVENHS 66
 
Name Accession Description Interval E-value
DUF3719 pfam12516
Protein of unknown function (DUF3719); This domain family is found in eukaryotes, and is ...
 114-179 2.61e-28

Protein of unknown function (DUF3719); This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved HLR sequence motif. There are two completely conserved residues (W and H) that may be functionally important.


Pssm-ID: 463617  Cd Length: 66  Bit Score: 104.34  E-value: 2.61e-28
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1958679485 114 LLYEQKPSVHTQSLQKECQQWASSFPHLRILGRQIITSS-EGYGLYPrSPSAVSASHEAILPQERES 179
Cdd:pfam12516   1 MLFEGKVSPQTQNLQAECQEWTRRFPHLRILGRQLIHPTdEGFQHYQ-SPAPSSASHEPLLSVENHS 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH