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Conserved domains on  [gi|1958779391|ref|XP_038966965|]
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zinc finger protein 462 isoform X3 [Rattus norvegicus]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 10621439)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0008270|GO:0003677
PubMed:  11361095|22803940|30718982
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
1160-1184 5.79e-04

C2H2-type zinc-finger domain;


:

Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 38.69  E-value: 5.79e-04
                           10        20
                   ....*....|....*....|....*
gi 1958779391 1160 YSCQYCSFVSAFRHNLDRHMQTHHG 1184
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1174-1200 8.68e-03

Zinc-finger double domain;


:

Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 8.68e-03
                           10        20
                   ....*....|....*....|....*..
gi 1958779391 1174 NLDRHMQTHHGhHKPFRCKLCSFKSSY 1200
Cdd:pfam13465    1 NLKRHMRTHTG-EKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
1160-1184 5.79e-04

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 38.69  E-value: 5.79e-04
                           10        20
                   ....*....|....*....|....*
gi 1958779391 1160 YSCQYCSFVSAFRHNLDRHMQTHHG 1184
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1174-1200 8.68e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 8.68e-03
                           10        20
                   ....*....|....*....|....*..
gi 1958779391 1174 NLDRHMQTHHGhHKPFRCKLCSFKSSY 1200
Cdd:pfam13465    1 NLKRHMRTHTG-EKPYKCPECGKSFKS 26
 
Name Accession Description Interval E-value
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
1160-1184 5.79e-04

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 38.69  E-value: 5.79e-04
                           10        20
                   ....*....|....*....|....*
gi 1958779391 1160 YSCQYCSFVSAFRHNLDRHMQTHHG 1184
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLRKHTG 25
zf-H2C2_2 pfam13465
Zinc-finger double domain;
1174-1200 8.68e-03

Zinc-finger double domain;


Pssm-ID: 463886 [Multi-domain]  Cd Length: 26  Bit Score: 35.42  E-value: 8.68e-03
                           10        20
                   ....*....|....*....|....*..
gi 1958779391 1174 NLDRHMQTHHGhHKPFRCKLCSFKSSY 1200
Cdd:pfam13465    1 NLKRHMRTHTG-EKPYKCPECGKSFKS 26
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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