1Z5L: Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1D

PDB ID: 1Z5LDownload
MMDB ID: 34286
PDB Deposition Date: 2005/3/18
Updated in MMDB: 2024/11
Experimental Method:
x-ray diffraction
Resolution: 2.2  Å
Source Organism:
Similar Structures:
Biological Unit for 1Z5L: dimeric; determined by author and by software (PISA)
Molecular Components in 1Z5L
Label Count Molecule
Proteins (2 molecules)
1
T-cell Surface Glycoprotein Cd1d Antigen
(Gene symbol: Cd1d1)
Molecule annotation
1
Beta-2-microglobulin
(Gene symbol: B2m)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
6
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
(2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL(2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL
3
1
HEXADECANEHEXADECANE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303