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2FFL:
Crystal Structure of Dicer from Giardia intestinalis
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PDB ID:
2FFL
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MMDB ID:
37360
PDB Deposition Date:
2005/12/19
Updated in MMDB:
2017/10
Experimental Method:
x-ray diffraction
Resolution:
3.33 Å
Source Organism:
Giardia intestinalis
Similar Structures:
VAST+
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Default Biological Unit
All Biological Units (5)
Asymmetric Unit
Biological Unit for 2FFL: monomeric; determined by author and by software (PISA)
Molecular Graphic
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Interactions
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A
A: Dicer
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
1
MN: MANGANESE (II) ION
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Format:
ASN.1 (Cn3D)
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Data Set:
alpha-Carbons
Single 3D structure
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Molecular Components in 2FFL
Label
Count
Molecule
Protein (1 molecule)
A
1
Dicer
1 Protein
SS Diagram
3D Domains
1
125
250
375
500
625
756
756 residues, click to see VAST similar structures.
helix 60-77
helix 84-91
helix 126-138
helix 195-202
helix 257-265
helix 267-283
helix 296-306
helix 330-357
helix 362-373
helix 374-385
helix 407-417
helix 422-433
helix 449-459
helix 464-477
helix 485-497
helix 503-517
helix 528-542
helix 589-603
helix 610-620
helix 632-642
helix 648-670
helix 675-683
helix 688-695
helix 701-710
helix 719-734
helix 737-746
strand 5-15
strand 16-27
strand 33-41
strand 42-48
strand 49-56
strand 110-117
strand 158-165
strand 167-173
strand 174-178
strand 185-189
strand 190-194
strand 213-220
strand 241-245
strand 249-252
strand 319-324
strand 544-547
strand 562-565
Domain 1 (1-148): click to see VAST similar structures
1
Domain 2 (149-254): click to see VAST similar structures
2
Domain 1 (255-327): click to see VAST similar structures
1
Domain 3 (328-441): click to see VAST similar structures
3
Domain 4 (442-500): click to see VAST similar structures
4
Domain 5 (544-606): click to see VAST similar structures
5
Domain 6 (607-756): click to see VAST similar structures
6
click domain graphic to toggle highlight of corresponding residues in 3D viewer
Chemicals and Non-standard biopolymers (14 molecules)
1
14
MANGANESE (II) ION
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Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
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