2Y69: Bovine heart cytochrome c oxidase re-refined with molecular oxygen

PDB ID: 2Y69Download
MMDB ID: 88898
PDB Deposition Date: 2011/1/20
Updated in MMDB: 2019/11
Experimental Method:
x-ray diffraction
Resolution: 1.95  Å
Source Organism:
Similar Structures:
Biological Unit for 2Y69: tridecameric; determined by author and by software (PISA)
Molecular Components in 2Y69
Label Count Molecule
Proteins (13 molecules)
1
Cytochrome C Oxidase Subunit 1
Molecule annotation
1
Cytochrome C Oxidase Subunit 2
(Gene symbol: COX2)
Molecule annotation
1
Cytochrome C Oxidase Subunit 3
Molecule annotation
1
Cytochrome C Oxidase Subunit 4 Isoform 1
(Gene symbol: COX4I1)
Molecule annotation
1
Cytochrome C Oxidase Subunit 5A
(Gene symbol: COX5A)
Molecule annotation
1
Cytochrome C Oxidase Subunit 5B
(Gene symbol: COX5B)
Molecule annotation
1
Cytochrome C Oxidase Polypeptide 6A2
(Gene symbol: COX6A2)
Molecule annotation
1
Cytochrome C Oxidase Subunit VIB Isoform 1
(Gene symbol: COX6B1)
Molecule annotation
1
Cytochrome C Oxidase Polypeptide VIC
(Gene symbol: MGC148714)
Molecule annotation
1
Cytochrome C Oxidase Polypeptide 7A1
(Gene symbol: COX7A1)
Molecule annotation
1
Cytochrome C Oxidase Polypeptide 7B
(Gene symbol: COX7B)
Molecule annotation
1
Cytochrome C Oxidase Subunit 7C
(Gene symbol: COX7C)
Molecule annotation
1
Cytochrome C Oxidase Polypeptide 8H
(Gene symbol: COX8B)
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
2
HEME-AHEME-A
2
1
COPPER (II) IONCOPPER (II) ION
3
1
OXYGEN MOLECULEOXYGEN MOLECULE
4
1
MAGNESIUM IONMAGNESIUM ION
5
4
CHOLIC ACIDCHOLIC ACID
6
1
DINUCLEAR COPPER IONDINUCLEAR COPPER ION
7
2
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE
8
2
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
9
1
ZINC IONZINC ION
10
1
DECYL-BETA-D-MALTOPYRANOSIDEDECYL-BETA-D-MALTOPYRANOSIDE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303