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3BCB:
Crystal structure of mouse selenocysteine synthase, sodium phosphate soak
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PDB ID:
3BCB
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MMDB ID:
61435
PDB Deposition Date:
2007/11/12
Updated in MMDB:
2012/12
Experimental Method:
x-ray diffraction
Resolution:
1.85 Å
Source Organism:
Mus musculus
Similar Structures:
VAST+
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Biological Unit
Asymmetric Unit
Biological Unit for 3BCB: tetrameric; determined by author and by software (PISA)
Molecular Graphic
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A
A: O-phosphoseryl-tRNA(Sec) selenium transferase
1
CL: CHLORIDE ION
2
PO4: PHOSPHATE ION
2
PO4: PHOSPHATE ION
A_1
A_1: O-phosphoseryl-tRNA(Sec) selenium transferase
A_2
A_2: O-phosphoseryl-tRNA(Sec) selenium transferase
A_3
A_3: O-phosphoseryl-tRNA(Sec) selenium transferase
1
CL: CHLORIDE ION
1
CL: CHLORIDE ION
1
CL: CHLORIDE ION
2
PO4: PHOSPHATE ION
2
PO4: PHOSPHATE ION
2
PO4: PHOSPHATE ION
2
PO4: PHOSPHATE ION
2
PO4: PHOSPHATE ION
2
PO4: PHOSPHATE ION
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Format:
ASN.1 (Cn3D)
PDB
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Data Set:
alpha-Carbons
Single 3D structure
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Molecular Components in 3BCB
Label
Count
Molecule
Proteins (4 molecules)
A
A_1
A_2
A_3
4
O-phosphoseryl-trna(sec) Selenium Transferase
(Gene symbol:
Sepsecs
)
4 Proteins
SS Diagram
3D Domains
1
100
200
300
400
450
450 residues, click to see VAST similar structures.
helix 8-20
helix 30-43
helix 63-71
helix 91-111
helix 126-137
helix 184-194
helix 217-227
helix 242-254
helix 282-290
helix 299-311
helix 312-341
helix 369-380
helix 426-448
strand 117-124
strand 145-151
strand 166-172
strand 173-177
strand 178-182
strand 200-206
strand 230-237
strand 258-264
strand 273-280
strand 353-360
strand 385-389
strand 392-397
strand 398-405
strand 406-409
strand 413-420
Domain 1 (1-114): click to see VAST similar structures
1
Domain 2 (115-294): click to see VAST similar structures
2
Domain 1 (295-311): click to see VAST similar structures
1
Domain 3 (312-450): click to see VAST similar structures
3
click domain graphic to toggle highlight of corresponding residues in 3D viewer
Chemicals and Non-standard biopolymers (12 molecules)
1
4
CHLORIDE ION
2
8
PHOSPHATE ION
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Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
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