NCBI
National Center for
Biotechnology Information
Search
3BL9:
Synthetic Gene Encoded DcpS bound to inhibitor DG157493
Citation is unavailable
PDB ID:
3BL9
Download
MMDB ID:
67459
PDB Deposition Date:
2007/12/10
Updated in MMDB:
2008/12
Experimental Method:
x-ray diffraction
Resolution:
1.8 Å
Source Organism:
Homo sapiens
Similar Structures:
VAST+
Download sequence data
Biological Unit
Asymmetric Unit
Biological Unit for 3BL9: dimeric; determined by author and by software (PISA)
Molecular Graphic
?
3D view
full-featured 3D viewer
Download Cn3D
Interactions
?
A
A: Scavenger mRNA-decapping enzyme DcpS
B
B: Scavenger mRNA-decapping enzyme DcpS
1
DD2: 5-{[1-(2,3-dichlorobenzyl)piperidin-4-yl]methoxy}quinazoline-2,4-diamine
Drag symbols to move
Double click symbols to explore molecules
Protein
Nucleotide
Chemical
Download Stucture Data
?
Download
Format:
ASN.1 (Cn3D)
PDB
XML
JSON
PNG (image)
Data Set:
alpha-Carbons
Single 3D structure
* Mouse right-click to bring up context menu
Molecular Components in 3BL9
Label
Count
Molecule
Proteins (2 molecules)
A
B
2
Scavenger mRNA-decapping Enzyme Dcps
(Gene symbol:
DCPS
)
2 Proteins
SS Diagram
3D Domains
1
50
100
150
200
250
301
301 residues, click to see VAST similar structures.
helix 55-63
helix 100-108
helix 120-132
helix 138-145
helix 202-219
helix 263-271
helix 290-298
strand 9-21
strand 24-33
strand 44-51
strand 67-75
strand 76-83
strand 90-97
strand 111-119
strand 154-158
strand 163-169
strand 179-187
strand 227-233
strand 240-246
strand 258-262
strand 279-287
Domain 1 (1-109): click to see VAST similar structures
1
Domain 2 (110-135): click to see VAST similar structures
2
Domain 3 (136-275): click to see VAST similar structures
3
Domain 2 (276-301): click to see VAST similar structures
2
click domain graphic to toggle highlight of corresponding residues in 3D viewer
Chemical and Non-standard biopolymers (1 molecule)
1
1
5-{[1-(2,3-dichlorobenzyl)piperidin-4-yl]methoxy}quinazoline-2,4-diamine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
You are here:
NCBI
>
Computational Biology Branch
>
Structure Group
> MMDB
Write to the Help Desk
HHS Vulnerability Disclosure