3EVJ: Intermediate structure of antithrombin bound to the natural pentasaccharide

PDB ID: 3EVJDownload
MMDB ID: 67534
PDB Deposition Date: 2008/10/13
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 3  Å
Source Organism:
Similar Structures:
Biological Unit for 3EVJ: dimeric; determined by author and by software (PISA)
Molecular Components in 3EVJ
Label Count Molecule
Proteins (2 molecules)
2
Antithrombin-iii
(Gene symbol: SERPINC1)
Molecule annotation
Chemicals and Non-standard biopolymers (24 molecules)
1
10
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
4
alpha-D-mannopyranosealpha-D-mannopyranose
3
2
methyl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranosidemethyl 2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranoside
4
2
2-O-sulfo-alpha-L-idopyranuronic acid2-O-sulfo-alpha-L-idopyranuronic acid
5
2
2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose2-deoxy-3,6-di-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
6
2
beta-D-glucopyranuronic acidbeta-D-glucopyranuronic acid
7
2
2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303