3HW8: ternary complex of DNA polymerase lambda of a two nucleotide gapped DNA substrate with a C in the scrunch site

PDB ID: 3HW8Download
MMDB ID: 76277
PDB Deposition Date: 2009/6/17
Updated in MMDB: 2021/10
Experimental Method:
x-ray diffraction
Resolution: 1.95  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3HW8: tetrameric; determined by author and by software (PISA)
Molecular Components in 3HW8
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Lambda
Molecule annotation
Nucleotides(3 molecules)
1
5'-d(*cp*gp*gp*cp*cp*ap*ap*tp*ap*cp*tp*g)-3'
Molecule annotation
1
5'-d(*cp*ap*gp*tp*ap*t)-3'
Molecule annotation
1
5'-d(p*gp*cp*cp*g)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (7 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
4
SODIUM IONSODIUM ION
3
1
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
4
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303