3PNC: Ternary crystal structure of a polymerase lambda variant with a GT mispair at the primer terminus and sodium at catalytic metal site

PDB ID: 3PNCDownload
MMDB ID: 88388
PDB Deposition Date: 2010/11/18
Updated in MMDB: 2011/05
Experimental Method:
x-ray diffraction
Resolution: 2  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3PNC: tetrameric; determined by author and by software (PISA)
Molecular Components in 3PNC
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase Lambda
Molecule annotation
Nucleotides(3 molecules)
1
5'-d(*cp*ap*gp*tp*ap*g)-3'
Molecule annotation
1
5'-d(*cp*gp*gp*cp*cp*tp*tp*ap*cp*tp*g)-3'
Molecule annotation
1
5'-d(*gp*cp*cp*g)-3'
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine
2
1
MAGNESIUM IONMAGNESIUM ION
3
3
SODIUM IONSODIUM ION
4
1
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303