NCBI
National Center for
Biotechnology Information
Search
3QW4:
Structure of Leishmania donovani UMP synthase
Citation is unavailable
PDB ID:
3QW4
Download
MMDB ID:
90049
PDB Deposition Date:
2011/2/26
Updated in MMDB:
2017/11
Experimental Method:
x-ray diffraction
Resolution:
3 Å
Source Organism:
Leishmania donovani
Similar Structures:
VAST+
Download sequence data
Default Biological Unit
All Biological Units (3)
Asymmetric Unit
Biological Unit for 3QW4: tetrameric; determined by author and by software (PISA)
Molecular Graphic
?
3D view
full-featured 3D viewer
Download Cn3D
Interactions
?
B
B: UMP synthase
C
C: UMP synthase
1
U5P: URIDINE-5'-MONOPHOSPHATE
2
CL: CHLORIDE ION
1
U5P: URIDINE-5'-MONOPHOSPHATE
1
U5P: URIDINE-5'-MONOPHOSPHATE
B_1
B_1: UMP synthase
C_1
C_1: UMP synthase
1
U5P: URIDINE-5'-MONOPHOSPHATE
2
CL: CHLORIDE ION
1
U5P: URIDINE-5'-MONOPHOSPHATE
1
U5P: URIDINE-5'-MONOPHOSPHATE
Drag symbols to move
Double click symbols to explore molecules
Protein
Nucleotide
Chemical
Download Stucture Data
?
Download
Format:
ASN.1 (Cn3D)
PDB
XML
JSON
PNG (image)
Data Set:
alpha-Carbons
Single 3D structure
* Mouse right-click to bring up context menu
Molecular Components in 3QW4
Label
Count
Molecule
Proteins (4 molecules)
B
C
B_1
C_1
4
UMP Synthase
(Gene symbol:
LDBPK_160560
)
4 Proteins
SS Diagram
3D Domains
1
100
200
300
400
453
453 residues, click to see VAST similar structures.
helix 4-11
helix 28-42
helix 61-72
helix 93-101
helix 156-164
helix 182-192
helix 209-216
helix 238-254
helix 260-269
helix 298-312
helix 328-338
helix 408-415
helix 428-435
helix 440-450
strand 16-22
strand 47-53
strand 78-84
strand 107-112
strand 129-135
strand 148-151
strand 152-155
strand 172-180
strand 196-201
strand 223-229
strand 271-274
strand 275-280
strand 282-285
strand 286-290
strand 318-323
strand 341-346
strand 357-360
strand 365-372
strand 373-376
strand 392-397
strand 398-401
strand 418-421
strand 422-425
Domain 1 (1-257): click to see VAST similar structures
1
Domain 2 (258-294): click to see VAST similar structures
2
Domain 3 (295-426): click to see VAST similar structures
3
Domain 2 (427-453): click to see VAST similar structures
2
click domain graphic to toggle highlight of corresponding residues in 3D viewer
Chemicals and Non-standard biopolymers (8 molecules)
1
6
URIDINE-5'-MONOPHOSPHATE
2
2
CHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
You are here:
NCBI
>
Computational Biology Branch
>
Structure Group
> MMDB
Write to the Help Desk
HHS Vulnerability Disclosure