3V8P: Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with a new di-adenosine inhibitor formed in situ

PDB ID: 3V8PDownload
MMDB ID: 98006
PDB Deposition Date: 2011/12/23
Updated in MMDB: 2017/11
Experimental Method:
x-ray diffraction
Resolution: 2.2901  Å
Source Organism:
Similar Structures:
Biological Unit for 3V8P: tetrameric; determined by author
Molecular Components in 3V8P
Label Count Molecule
Proteins (4 molecules)
4
Probable Inorganic Polyphosphate/atp-nad Kinase 1
(Gene symbol: ppnK)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
4
CITRIC ACIDCITRIC ACID
2
4
2-[6-azanyl-9-[(2R,3R,4S,5R)-5-[[(azanylidene-$l^{4}-azanylidene)amino]methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanyl-N-[[(2R,3S,4R,5R)-5-(6-azanyl-8-bromanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]ethanamide2-[6-azanyl-9-[(2R,3R,4S,5R)-5-[[(azanylidene-$l^{4}-azanylidene)amino]methyl]-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanyl-N-[[(2R,3S,4R,5R)-5-(6-azanyl-8-bromanyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]ethanamide
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303