3VYQ: Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1

PDB ID: 3VYQDownload
MMDB ID: 106625
PDB Deposition Date: 2012/10/2
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.525  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3VYQ: tetrameric; determined by author and by software (PISA)
Molecular Components in 3VYQ
Label Count Molecule
Proteins (2 molecules)
2
Methyl-cpg-binding Domain Protein 4
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*ap*cp*ap*tp*cp*(5cm)p*gp*gp*tp*gp*a)-3')
Molecule annotation
1
DNA (5'-d(*tp*cp*ap*cp*tp*gp*gp*ap*tp*gp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
3
ZINC IONZINC ION
2
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303