4OGQ: Internal Lipid Architecture of the Hetero-Oligomeric Cytochrome b6f Complex

PDB ID: 4OGQDownload
MMDB ID: 119436
PDB Deposition Date: 2014/1/16
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.501  Å
Source Organism:
Similar Structures:
Biological Unit for 4OGQ: hexadecameric; determined by author and by software (PISA)
Molecular Components in 4OGQ
Label Count Molecule
Proteins (16 molecules)
2
Cytochrome B6
Molecule annotation
2
Cytochrome B6-f Complex Subunit 4
Molecule annotation
2
Apocytochrome F
Molecule annotation
2
Cytochrome B6-f Complex Iron-sulfur Subunit 1
Molecule annotation
2
Cytochrome B6-f Complex Subunit 6
Molecule annotation
2
Cytochrome B6-f Complex Subunit 7
Molecule annotation
2
Cytochrome B6-f Complex Subunit 5
Molecule annotation
2
Cytochrome B6-f Complex Subunit 8
Molecule annotation
Chemicals and Non-standard biopolymers (62 molecules)
1
8
HEME CHEME C
2
10
UNDECYL-MALTOSIDEUNDECYL-MALTOSIDE
3
10
(1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate(1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate
4
8
OctadecaneOctadecane
5
2
(1S,8E)-1-{[(2S)-3-hydroxy-2-{[(1S)-1-hydroxyoctadecyl]oxy}propyl]oxy}octadec-8-en-1-ol(1S,8E)-1-{[(2S)-3-hydroxy-2-{[(1S)-1-hydroxyoctadecyl]oxy}propyl]oxy}octadec-8-en-1-ol
6
2
CHLOROPHYLL ACHLOROPHYLL A
7
2
(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDE
8
2
CADMIUM IONCADMIUM ION
9
2
PENTADECANEPENTADECANE
10
2
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
11
2
FE2/S2 (INORGANIC) CLUSTERFE2/S2 (INORGANIC) CLUSTER
12
2
(1R)-1-{[(2S)-3-hydroxy-2-{[(1R)-1-hydroxypentyl]oxy}propyl]oxy}hexan-1-ol(1R)-1-{[(2S)-3-hydroxy-2-{[(1R)-1-hydroxypentyl]oxy}propyl]oxy}hexan-1-ol
13
2
(1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-hydroxypropane-1,2-diyl]bis(oxy)}bisoctadec-8-en-1-ol(1S,8E,1'R,8'Z)-1,1'-{[(2S)-3-hydroxypropane-1,2-diyl]bis(oxy)}bisoctadec-8-en-1-ol
14
2
(1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol(1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol
15
2
N-OCTANEN-OCTANE
16
2
(2S)-3-(alpha-D-galactopyranosyloxy)-2-(hexadecanoyloxy)propyl (9Z)-octadec-9-enoate(2S)-3-(alpha-D-galactopyranosyloxy)-2-(hexadecanoyloxy)propyl (9Z)-octadec-9-enoate
17
2
BETA-CAROTENEBETA-CAROTENE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303