4OO1: Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA

PDB ID: 4OO1Download
MMDB ID: 121169
PDB Deposition Date: 2014/1/29
Updated in MMDB: 2017/12
Experimental Method:
x-ray diffraction
Resolution: 3.3  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 4OO1: undecameric; determined by author and by software (PISA)
Molecular Components in 4OO1
Label Count Molecule
Proteins (10 molecules)
1
Exosome Complex Component Rrp45
Molecule annotation
1
Exosome Complex Component Ski6
Molecule annotation
1
Exosome Complex Component Rrp43
Molecule annotation
1
Exosome Complex Component Rrp46
Molecule annotation
1
Exosome Complex Component Rrp42
Molecule annotation
1
Exosome Complex Component Mtr3
Molecule annotation
1
Exosome Complex Component Rrp40
Molecule annotation
1
Exosome Complex Component Rrp4
Molecule annotation
1
Exosome Complex Component Csl4
Molecule annotation
1
Exosome Complex Exonuclease Rrp6
Molecule annotation
Nucleotide(1 molecule)
1
Poly a RNA
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
1
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
3
1
2-(N-MORPHOLINO)-ETHANESULFONIC ACID2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
2
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303