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4ZNE:
IgG1 Fc-FcgammaRI ecd complex
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PDB ID:
4ZNE
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MMDB ID:
134058
PDB Deposition Date:
2015/5/4
Updated in MMDB:
2024/11
Experimental Method:
x-ray diffraction
Resolution:
2.42 Å
Source Organism:
Homo sapiens
Similar Structures:
VAST+
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Biological Unit
Asymmetric Unit
Biological Unit for 4ZNE: trimeric; determined by author
Molecular Graphic
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Interactions
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A
A: High affinity immunoglobulin gamma Fc receptor I
E
E: Ig gamma-1 chain C region
J
J: Ig gamma-1 chain C region
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
2
MAN: alpha-D-mannopyranose
2
MAN: alpha-D-mannopyranose
2
MAN: alpha-D-mannopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
3
FUL: beta-L-fucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
2
MAN: alpha-D-mannopyranose
2
MAN: alpha-D-mannopyranose
2
MAN: alpha-D-mannopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
1
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
4
ZN: ZINC ION
4
ZN: ZINC ION
4
ZN: ZINC ION
MAN
MAN: alpha-D-mannopyranose
MAN
MAN: alpha-D-mannopyranose
NAG
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
NAG
NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose
FUL
FUL: beta-L-fucopyranose
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Format:
ASN.1 (Cn3D)
PDB
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PNG (image)
Data Set:
alpha-Carbons
Single 3D structure
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Molecular Components in 4ZNE
Label
Count
Molecule
Proteins (3 molecules)
A
1
High Affinity Immunoglobulin Gamma FC Receptor I
(Gene symbol:
FCGR1A
)
1 Protein
SS Diagram
3D Domains
1
50
100
150
200
250
267
267 residues, click to see VAST similar structures.
strand 9-13
strand 16-20
strand 21-28
strand 40-44
strand 53-61
strand 65-70
strand 80-87
strand 89-95
strand 97-100
strand 101-112
strand 119-125
strand 126-133
strand 137-144
strand 148-157
strand 159-164
strand 165-172
strand 177-183
strand 185-189
strand 190-199
strand 210-217
strand 218-225
strand 228-236
strand 240-249
strand 254-259
strand 260-267
Domain 1 (1-88): click to see VAST similar structures
1
Domain 2 (89-174): click to see VAST similar structures
2
Domain 3 (175-267): click to see VAST similar structures
3
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E
J
2
IG Gamma-1 Chain C Region
(Gene symbol:
IGHG1
)
2 Proteins
SS Diagram
3D Domains
1
50
100
150
200
227
227 residues, click to see VAST similar structures.
helix 89-96
strand 18-25
strand 37-45
strand 53-60
strand 67-71
strand 72-76
strand 78-88
strand 98-105
strand 111-117
strand 124-133
strand 141-153
strand 157-164
strand 165-168
strand 170-174
strand 176-180
strand 182-194
strand 202-209
strand 215-222
Domain 1 (1-120): click to see VAST similar structures
1
Domain 2 (121-227): click to see VAST similar structures
2
click domain graphic to toggle highlight of corresponding residues in 3D viewer
Chemicals and Non-standard biopolymers (28 molecules)
1
15
2-acetamido-2-deoxy-beta-D-glucopyranose
2
8
alpha-D-mannopyranose
3
2
beta-L-fucopyranose
4
3
ZINC ION
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Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
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