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5A4F:
The mechanism of Hydrogen Activation by NiFe-hydrogenases
PDB ID:
5A4F
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MMDB ID:
168784
PDB Deposition Date:
2015/6/9
Updated in MMDB:
2018/11
Experimental Method:
x-ray diffraction
Resolution:
1.25 Å
Source Organism:
Escherichia coli str. K-12 substr. MC4100
Similar Structures:
VAST+
Download sequence data
Biological Unit for 5A4F: tetrameric; determined by author and by software (PISA)
Molecular Components in 5A4F
Label
Count
Molecule
Proteins (4 molecules)
L
M
2
Hydrogenase-1 Large Chain
(Gene symbol:
hyaB
)
S
T
2
Hydrogenase-1 Small Chain
(Gene symbol:
hyaA
)
Chemicals and Non-standard biopolymers (18 molecules)
1
2
CARBONMONOXIDE-(DICYANO) IRON
2
2
NICKEL (II) ION
3
2
MAGNESIUM ION
4
2
SULFATE ION
5
2
IRON/SULFUR CLUSTER
6
2
FE3-S4 CLUSTER
7
2
FE4-S3 CLUSTER
8
4
CHLORIDE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303