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5H2V:
Crystal structure of the karyopherin Kap121p bound to the SUMO protease Ulp1p
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PDB ID:
5H2V
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MMDB ID:
145590
PDB Deposition Date:
2016/10/18
Updated in MMDB:
2016/12
Experimental Method:
x-ray diffraction
Resolution:
2.8 Å
Source Organism:
Saccharomyces cerevisiae S288C
Similar Structures:
VAST+
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Molecular Graphic
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Interactions
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A
A: Importin subunit beta-3
B
B: Ubiquitin-like-specific protease 1
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Nucleotide
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Format:
ASN.1 (Cn3D)
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Data Set:
alpha-Carbons
Single 3D structure
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Molecular Components in 5H2V
Label
Count
Molecule
Proteins (2 molecules)
A
1
Importin Subunit Beta-3
(Gene symbol:
PSE1
)
1 Protein
SS Diagram
3D Domains
1
250
500
750
1000
1078
1078 residues, click to see VAST similar structures.
helix 6-18
helix 27-36
helix 44-56
helix 61-78
helix 85-100
helix 105-118
helix 128-138
helix 142-154
helix 165-176
helix 180-195
helix 208-216
helix 225-241
helix 250-262
helix 269-279
helix 285-292
helix 294-308
helix 332-348
helix 355-364
helix 370-383
helix 395-402
helix 411-428
helix 429-437
helix 438-447
helix 454-468
helix 480-490
helix 496-513
helix 525-532
helix 542-557
helix 566-577
helix 588-602
helix 614-622
helix 659-678
helix 685-693
helix 704-723
helix 732-746
helix 753-770
helix 777-798
helix 819-838
helix 850-857
helix 863-878
helix 890-898
helix 903-918
helix 931-938
helix 950-965
helix 977-984
helix 991-1005
helix 1018-1031
helix 1043-1050
helix 1067-1075
strand 626-630
strand 643-646
strand 653-658
Domain 1 (1-123): click to see VAST similar structures
1
Domain 2 (124-220): click to see VAST similar structures
2
Domain 3 (221-389): click to see VAST similar structures
3
Domain 4 (390-608): click to see VAST similar structures
4
Domain 5 (609-844): click to see VAST similar structures
5
Domain 6 (845-1011): click to see VAST similar structures
6
Domain 7 (1012-1078): click to see VAST similar structures
7
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B
1
Ubiquitin-like-specific Protease 1
(Gene symbol:
ULP1
)
1 Protein
1
150
150 residues, click to see VAST similar structures.
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Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303
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