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5JPQ:
Cryo-EM structure of the 90S pre-ribosome
PDB ID:
5JPQ
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MMDB ID:
168161
PDB Deposition Date:
2016/5/4
Updated in MMDB:
2022/11
Experimental Method:
electron microscopy
Resolution:
7.3 Å
Source Organism:
Saccharomyces cerevisiae S288C
▼
Taxonomy
Molecule
Saccharomyces cerevisiae S288C
I
Thermochaetoides thermophila
A, B, C, D, E, F, G, H, J, K, L, M,
N, O, P, Q, R, S, T, U, V, W, X,
Y, Z, a, b, c, d, e, f, g, h, i
, j, k, l, m, n, o, p, q, r, s,
t, u, v, w, x, y, z, 0, 1, 2, 3
Similar Structures:
VAST+
Download sequence data
Molecular Components in 5JPQ
Label
Count
Molecule
Proteins (54 molecules)
A
B
C
D
E
F
J
K
L
N
P
l
n
13
Wd40 Domain Proteins
G
1
Utp10
H
1
Utp-a Oligomerization Domain
I
1
U3 Small Nucleolar RNA-associated Protein 21
M
O
m
3
Wd40 Domain Proteins
Q
1
Utp6
R
1
Utp-b Oligomerisation Domain
S
T
2
PRE mRNA Splicing Protein
U
V
2
Snu13
W
X
2
Nop1
Y
1
Rrp9
Z
1
Rcl1
a
1
Bms1
b
1
Imp3
c
1
Putative U3 Small Nucleolar Ribonucleoprotein
d
1
Utp24
e
f
2
Emg1
g
h
2
Krr1 Small Subunit Processome Component
i
j
2
Kre33
k
1
Utp30
o
1
ES1
p
1
ES4
q
1
US7
r
1
ES6
s
1
ES7
t
1
ES8
u
1
US4
v
1
Us15
w
1
Us11
x
1
US9
y
1
Us17
z
1
US8
0
1
Es24
1
1
Es28
Nucleotides(2 molecules)
2
1
18S Ribosomal RNA
3
1
U3 RNA
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303