5LD2: Cryo-EM structure of RecBCD+DNA complex revealing activated nuclease domain

PDB ID: 5LD2Download
MMDB ID: 182232
PDB Deposition Date: 2016/6/23
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.83  Å
Source Organism:
Escherichia coli K-12▼
Similar Structures:
Biological Unit for 5LD2: tetrameric; determined by author and by software (PISA)
Molecular Components in 5LD2
Label Count Molecule
Proteins (3 molecules)
1
Recbcd Enzyme Subunit Recb,recbcd Enzyme Subunit Recb,recbcd Enzyme Subunit Recb
Molecule annotation
1
Recbcd Enzyme Subunit Recc
Molecule annotation
1
Recbcd Enzyme Subunit Recd
Molecule annotation
Nucleotide(1 molecule)
1
Fork-hairpin DNA (70-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303