6F5R: Crystal Structure of KDM4D with GF028 ligand

PDB ID: 6F5RDownload
MMDB ID: 169517
PDB Deposition Date: 2017/12/2
Updated in MMDB: 2018/12
Experimental Method:
x-ray diffraction
Resolution: 1.607  Å
Source Organism:
Similar Structures:
Biological Unit for 6F5R: monomeric; determined by author and by software (PISA)
Molecular Components in 6F5R
Label Count Molecule
Protein (1 molecule)
1
Lysine-specific Demethylase 4D
(Gene symbol: KDM4D)
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
1
ZINC IONZINC ION
2
1
CHLORIDE IONCHLORIDE ION
3
9
1,2-ETHANEDIOL1,2-ETHANEDIOL
4
1
NICKEL (II) IONNICKEL (II) ION
5
2
SULFATE IONSULFATE ION
6
1
2-(3-oxidanylpropylamino)pyridine-4-carboxylic acid2-(3-oxidanylpropylamino)pyridine-4-carboxylic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303