6IYV: Crystal sturucture of L,D-transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with ertapenem adduct

PDB ID: 6IYVDownload
MMDB ID: 172701
PDB Deposition Date: 2018/12/17
Updated in MMDB: 2024/11
Experimental Method:
x-ray diffraction
Resolution: 1.5  Å
Source Organism:
Similar Structures:
Biological Unit for 6IYV: monomeric; determined by author
Molecular Components in 6IYV
Label Count Molecule
Protein (1 molecule)
1
L,d-transpeptidase 2
(Gene symbol: ldtB)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
(2S,3R,4S)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid(2S,3R,4S)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid
2
4
GLYCEROLGLYCEROL
3
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
4
1
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303