6N94: Methylmalonyl-CoA decarboxylase in complex with 2-nitronate-propionyl-amino(dethia)-CoA

PDB ID: 6N94Download
MMDB ID: 174199
PDB Deposition Date: 2018/11/30
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 1.75  Å
Source Organism:
Similar Structures:
Biological Unit for 6N94: hexameric; determined by author and by software (PISA)
Molecular Components in 6N94
Label Count Molecule
Proteins (6 molecules)
6
Methylmalonyl-coa Decarboxylase
(Gene symbol: scpB)
Molecule annotation
Chemicals and Non-standard biopolymers (18 molecules)
1
9
[1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylamino]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium[1-[2-[3-[[(2~{R})-4-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethylamino]-1-oxidanylidene-propan-2-ylidene]-bis(oxidanidyl)azanium
2
2
NICKEL (II) IONNICKEL (II) ION
3
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
4
2
POTASSIUM IONPOTASSIUM ION
5
1
TETRAETHYLENE GLYCOLTETRAETHYLENE GLYCOL
6
1
IMIDAZOLEIMIDAZOLE
7
1
TRIETHYLENE GLYCOLTRIETHYLENE GLYCOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303