6QZK: Structure of Clostridium butyricum Argonaute bound to a guide DNA (5' deoxycytidine) and a 19-mer target DNA

PDB ID: 6QZKDownload
MMDB ID: 174744
PDB Deposition Date: 2019/3/11
Updated in MMDB: 2019/07
Experimental Method:
x-ray diffraction
Resolution: 3.548  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 6QZK: trimeric; determined by author and by software (PISA)
Molecular Components in 6QZK
Label Count Molecule
Protein (1 molecule)
1
Clostridium Butyricum Argonaute
Molecule annotation
Nucleotides(2 molecules)
1
Sidna Guide (5'-d(p*cp*gp*ap*gp*gp*tp*ap*gp*tp*ap*gp*gp*tp*tp*gp*tp*ap*tp*ap*gp*t)-3')
Molecule annotation
1
DNA Target (5'-d(t*ap*tp*ap*cp*ap*ap*cp*cp*tp*ap*cp*tp*ap*cp*cp*tp*cp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
5
FORMIC ACIDFORMIC ACID
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303