6RNY: PFV intasome - nucleosome strand transfer complex

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PDB ID: 6RNYDownload
MMDB ID: 179911
PDB Deposition Date: 2019/5/9
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.9  Å
Source Organism:
Pyrobaculum filamentous virus 1
Similar Structures:
Biological Unit for 6RNY: octadecameric; determined by author and by software (PISA)
Molecular Graphic ?
6RNY: PFV intasome - nucleosome strand transfer complex
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Interactions?
AA: Histone H3.3BB: Histone H4CC: Histone H2A type 1DD: Histone H2B type 1-C/E/F/G/IEE: Histone H3.3FF: Histone H4GG: Histone H2A type 1HH: Histone H2B type 1-C/E/F/G/IKK: IntegraseLL: IntegraseOO: IntegrasePP: IntegraseII: DNA (128-MER)UU: DNA (108-MER)TT: DNA (33-MER)JJ: DNA (53-MER)QQ: DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*C)-3')MM: DNA (5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP*TP*CP*GP*C)-3')1MG: MAGNESIUM ION1MG: MAGNESIUM ION
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Data Set:
Molecular Components in 6RNY
Label Count Molecule
Proteins (12 molecules)
2
Histone H3.3
2 Proteins
SS Diagram
3D Domains
175136136 residues, click to see VAST similar structures.helix 46-57helix 66-76helix 87-115helix 123-131Domain 1 (62-136): click to see VAST similar structures1
2
Histone H4
2 Proteins
SS Diagram
175103103 residues, click to see VAST similar structures.helix 32-42helix 52-77helix 86-94
2
Histone H2A Type 1
2 Proteins
SS Diagram
175130130 residues, click to see VAST similar structures.helix 29-37helix 48-74helix 81-88helix 91-99
2
Histone H2B Type 1-c/e/f/g/i
2 Proteins
SS Diagram
175126126 residues, click to see VAST similar structures.helix 39-47helix 57-84helix 92-102helix 107-124
4
Integrase
4 Proteins
SS Diagram
3D Domains
175150225300375395395 residues, click to see VAST similar structures.helix 57-65helix 73-80helix 88-96helix 167-177helix 197-205helix 223-238helix 249-258helix 295-303strand 41-45strand 46-50strand 126-134strand 143-151strand 155-162strand 183-188strand 207-212strand 324-330strand 339-342strand 343-348strand 353-360strand 361-369strand 371-375Domain 1 (54-111): click to see VAST similar structures1Domain 2 (112-276): click to see VAST similar structures2Domain 3 (314-395): click to see VAST similar structures3
Nucleotides(6 molecules)
1
DNA (128-mer)
1255075100128
1
DNA (108-mer)
1255075100108
1
DNA (33-mer)
1
DNA (53-mer)
2
DNA (5'-d(*ap*tp*tp*gp*tp*cp*ap*tp*gp*gp*ap*ap*tp*tp*tp*cp*gp*c)-3')
Chemicals and Non-standard biopolymers (2 molecules)
2
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Citing MMDB
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