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6RUI:
RNA Polymerase I Pre-initiation complex DNA opening intermediate 2
PDB ID:
6RUI
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MMDB ID:
182175
PDB Deposition Date:
2019/5/28
Updated in MMDB:
2019/12
Experimental Method:
electron microscopy
Resolution:
2.7 Å
Source Organism:
synthetic construct
▼
Taxonomy
Molecule
synthetic construct
T, U
Saccharomyces cerevisiae
I, N, M, A, B, C, D, E, F, G, H, J,
K, L, O, Q, S, R
Similar Structures:
VAST+
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Biological Unit for 6RUI: eicosameric; determined by author and by software (PISA)
Molecular Components in 6RUI
Label
Count
Molecule
Proteins (18 molecules)
I
1
DNA-directed RNA Polymerase I Subunit Rpa12
N
1
DNA-directed RNA Polymerase I Subunit Rpa34
M
1
DNA-directed RNA Polymerase I Subunit Rpa49
A
1
DNA-directed RNA Polymerase I Subunit Rpa190
B
1
DNA-directed RNA Polymerase I Subunit Rpa135
C
1
DNA-directed RNA Polymerases I and III Subunit Rpac1
D
1
DNA-directed RNA Polymerase I Subunit Rpa14
E
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
F
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
G
1
DNA-directed RNA Polymerase I Subunit Rpa43
H
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
J
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
K
1
DNA-directed RNA Polymerases I and III Subunit Rpac2
L
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
O
1
RNA Polymerase I-specific Transcription Initiation Factor Rrn3
Q
1
RNA Polymerase I-specific Transcription Initiation Factor Rrn7
S
1
RNA Polymerase I-specific Transcription Initiation Factor Rrn6
R
1
RNA Polymerase I-specific Transcription Initiation Factor Rrn11
Nucleotides(2 molecules)
T
1
Template Strand
U
1
Nontemplate Strand
Chemical and Non-standard biopolymers (1 molecule)
1
1
ZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH.
"
MMDB and VAST+: tracking structural similarities between macromolecular complexes.
Nucleic Acids Res. 2014 Jan; 42(Database issue)
:D297-303