6YPD: Crystal structure of AmpC from E. coli with Cyclic Boronate 3 (CB3 / APC308)

PDB ID: 6YPDDownload
MMDB ID: 189334
PDB Deposition Date: 2020/4/15
Updated in MMDB: 2020/10
Experimental Method:
x-ray diffraction
Resolution: 1.6  Å
Source Organism:
Similar Structures:
Biological Unit for 6YPD: monomeric; determined by author and by software (PISA)
Molecular Components in 6YPD
Label Count Molecule
Protein (1 molecule)
1
Beta-lactamase
(Gene symbol: ampC)
Molecule annotation
Chemicals and Non-standard biopolymers (8 molecules)
1
1
(3~{S})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid(3~{S})-2,2-bis(oxidanyl)-3-(phenylmethylsulfanyl)-3,4-dihydro-1,2-benzoxaborinin-2-ium-8-carboxylic acid
2
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
3
1
DIMETHYL SULFOXIDEDIMETHYL SULFOXIDE
4
2
1,2-ETHANEDIOL1,2-ETHANEDIOL
5
1
CHLORIDE IONCHLORIDE ION
6
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303