National Center for
Biotechnology Information

7DUJ: Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

PDB ID:

MMDB ID:

210612

PDB Deposition Date:

2021/1/9

Updated in MMDB:

2022/01

Experimental Method:

x-ray diffraction

Resolution:

3.75 Å

Source Organism:

Thermus thermophilus HB8▼

Taxonomy	Molecule
Thermus thermophilus HB8	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U
Thermus thermophilus	Y, W

Similar Structures:

Biological Unit for 7DUJ: 23-meric; determined by author

Molecular Components in 7DUJ
Label	Count	Molecule
Proteins (20 molecules)
B	1	30S Ribosomal Protein S2
C	1	30S Ribosomal Protein S3
D	1	30S Ribosomal Protein S4
E	1	30S Ribosomal Protein S5
F	1	30S Ribosomal Protein S6
G	1	30S Ribosomal Protein S7
H	1	30S Ribosomal Protein S8
I	1	30S Ribosomal Protein S9
J	1	30S Ribosomal Protein S10
K	1	30S Ribosomal Protein S11
L	1	30S Ribosomal Protein S12
M	1	30S Ribosomal Protein S13
N	1	30S Ribosomal Protein S14 Type Z
O	1	30S Ribosomal Protein S15
P	1	30S Ribosomal Protein S16
Q	1	30S Ribosomal Protein S17
R	1	30S Ribosomal Protein S18
S	1	30S Ribosomal Protein S19
T	1	30S Ribosomal Protein S20
U	1	30S Ribosomal Protein THX
Nucleotides(3 molecules)
A	1	30S Ribosomal RNA rRNA
Y	1	RNA (5'-r(upupupupupu)-3')
W	1	RNA (5'-r(gpgpgpapupupgpapapapapupcpcp*c)-3')
Chemicals and Non-standard biopolymers (252 molecules)
1	249	MAGNESIUM ION (Link to PubChem not yet available)
2	1	(1S,2S,3R,4S,6R)-4,6-diamino-3-{[(2S,3R)-3-amino-6-(aminomethyl)-3,4-dihydro-2H-pyran-2-yl]oxy}-2-hydroxycyclohexyl 3-deoxy-4-C-methyl-3-(methylamino)-beta-L-arabinopyranoside (Link to PubChem not yet available)
3	2	ZINC ION (Link to PubChem not yet available)

* Click molecule labels to explore molecular sequence information.

Citing MMDB