National Center for
Biotechnology Information

7EGB: TFIID-based holo PIC on SCP promoter

PDB ID:

7EGB Download

MMDB ID:

233425

PDB Deposition Date:

2021/3/24

Updated in MMDB:

2024/11

Experimental Method:

electron microscopy

Resolution:

3.3 Å

Source Organism:

Sus scrofa▼

Taxonomy	Molecule
Sus scrofa	p, q, r, s, t, u, v, w, x, y, z
Homo sapiens	0, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, D, E, F, G, H, I, J, L, O, P, Q, R, S, T, U, V, X, Y, c, d, e, f , i, j, k, l, m, o

Similar Structures:

Biological Unit for 7EGB: 51-meric; determined by author

Molecular Components in 7EGB
Label	Count	Molecule
Proteins (49 molecules)
0	1	Cdk-activating Kinase Assembly Factor Mat1
1	1	General Transcription Factor IIH Subunit 1
2	1	General Transcription Factor IIH Subunit 2
3	1	General Transcription Factor IIH Subunit 3
4	1	General Transcription Factor IIH Subunit 4
5	1	General Transcription Factor IIH Subunit 5
6	1	General Transcription and DNA Repair Factor IIH Helicase Subunit XPB
7	1	General Transcription and DNA Repair Factor IIH Helicase Subunit XPD
8	1	Cyclin-dependent Kinase 7
9	1	Cyclin-h
A	1	Transcription Initiation Factor Tfiid Subunit 1
B	1	Transcription Initiation Factor Tfiid Subunit 2
D d	2	Transcription Initiation Factor Tfiid Subunit 4
E e	2	Transcription Initiation Factor Tfiid Subunit 5
F f	2	Transcription Initiation Factor Tfiid Subunit 6
G	1	Transcription Initiation Factor Tfiid Subunit 7
H	1	Transcription Initiation Factor Tfiid Subunit 8
I i	2	Transcription Initiation Factor Tfiid Subunit 9
J j	2	Transcription Initiation Factor Tfiid Subunit 10
L l	2	Transcription Initiation Factor Tfiid Subunit 12
O	1	Transcription Initiation Factor IIA Subunit 2
P	1	Tata-box-binding Protein
Q	1	Transcription Initiation Factor IIA Subunit 1
R	1	Transcription Initiation Factor IIB
S	1	General Transcription Factor IIF Subunit 1
T	1	General Transcription Factor IIF Subunit 2
U	1	General Transcription Factor IIE Subunit 1
V	1	Transcription Initiation Factor IIE Subunit Beta
c	1	Transcription Initiation Factor Tfiid Subunit 3
k	1	Transcription Initiation Factor Tfiid Subunit 11
m	1	Transcription Initiation Factor Tfiid Subunit 13
o	1	DNA-directed RNA Polymerase II Subunit Rpb1
p	1	DNA-directed RNA Polymerase Subunit Beta
q	1	DNA-directed RNA Polymerase II Subunit Rpb3
r	1	DNA-directed RNA Polymerase II Subunit Rpb4
s	1	DNA-directed RNA Polymerase II Subunit E
t	1	DNA-directed RNA Polymerase II Subunit F
u	1	DNA-directed RNA Polymerase II Subunit Rpb7
v	1	DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
w	1	DNA-directed RNA Polymerase II Subunit Rpb9
x	1	Rpb10
y	1	RNA_pol_l_2 Domain-containing Protein
z	1	Rpb12
Nucleotides(2 molecules)
X	1	DNA (69-mer)
Y	1	DNA (69-mer)
Chemicals and Non-standard biopolymers (19 molecules)
1	17	ZINC ION (Link to PubChem not yet available)
2	1	IRON/SULFUR CLUSTER (Link to PubChem not yet available)
3	1	MAGNESIUM ION (Link to PubChem not yet available)

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303