7POW: Crystal structure of phosphatidyl serine synthase (PSS) in transition state

PDB ID: 7POWDownload
MMDB ID: 209751
PDB Deposition Date: 2021/9/10
Updated in MMDB: 2021/12
Experimental Method:
x-ray diffraction
Resolution: 2.51  Å
Source Organism:
Similar Structures:
Biological Unit for 7POW: dimeric; determined by author and by software (PISA)
Molecular Components in 7POW
Label Count Molecule
Proteins (2 molecules)
2
Cdp-diacylglycerol--serine O-phosphatidyltransferase
Molecule annotation
Chemicals and Non-standard biopolymers (23 molecules)
1
1
(2S)-2-amino-3-[[[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl]oxy-[(2R)-2,3-bis[[(Z)-octadec-9-enoyl]oxy]propoxy]-dihydroxy-lambda^5-phosphanyl]oxy-propanoic acid (Link to PubChem not yet available)(2S)-2-amino-3-[[[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-tetrahydrofuran-2-yl]methoxy-hydroxy-phosphoryl]oxy-[(2R)-2,3-bis[[(Z)-octadec-9-enoyl]oxy]propoxy]-dihydroxy-lambda^5-phosphanyl]oxy-propanoic acid
2
2
CALCIUM ION (Link to PubChem not yet available)CALCIUM ION
3
2
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
4
6
CHLORIDE ION (Link to PubChem not yet available)CHLORIDE ION
5
10
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate (Link to PubChem not yet available)(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
6
1
5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine (Link to PubChem not yet available)5'-O-[(R)-{[(S)-{(2R)-2,3-bis[(9E)-octadec-9-enoyloxy]propoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]cytidine
7
1
SERINE (Link to PubChem not yet available)SERINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303