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7PZY: Structure of the vacant Candida albicans 80S ribosome

PDB ID:	7PZY Download
MMDB ID:	215503
PDB Deposition Date:	2021/10/13
Updated in MMDB:	2022/11
Experimental Method:	electron microscopy
Resolution:	2.32 Å
Source Organism:	Candida albicans SC5314
Similar Structures:

Biological Unit for 7PZY: 80-meric; determined by author

Molecular Components in 7PZY
Label	Count	Molecule
Proteins (75 molecules)
j	1	Ribosomal 60S Subunit Protein L2A (Gene symbol: RPL2)
k	1	60S Ribosomal Protein L3
l	1	Ribosomal 60S Subunit Protein L4B
m	1	Ribosomal 60S Subunit Protein L5
n	1	60S Ribosomal Protein L6
o	1	Ribosomal 60S Subunit Protein L7A
p	1	60S Ribosomal Protein L8
q	1	Ribosomal 60S Subunit Protein L9B
r	1	Ribosomal 60S Subunit Protein L10
s	1	Ribosomal 60S Subunit Protein L11b
t	1	60S Ribosomal Protein L13
u	1	Ribosomal 60S Subunit Protein L14b
v	1	Ribosomal Protein L15
w	1	Ribosomal 60S Subunit Protein L16a
x	1	Ribosomal 60S Subunit Protein L17b
y	1	Ribosomal 60S Subunit Protein L18a
z	1	Ribosomal Protein L19
0	1	60S Ribosomal Protein L20
2	1	Ribosomal 60S Subunit Protein L21a
5	1	Ribosomal 60S Subunit Protein L22b
6	1	Ribosomal 60S Subunit Protein L23b
7	1	Ribosomal 60S Subunit Protein L24a
8	1	Ribosomal 60S Subunit Protein L25
9	1	Ribosomal 60S Subunit Protein L26b
AA	1	60S Ribosomal Protein L27
AB	1	Ribosomal 60S Subunit Protein L28
AC	1	60S Ribosomal Protein L29
AD	1	Ribosomal 60S Subunit Protein L30
AE	1	Ribosomal 60S Subunit Protein L31b
AF	1	Ribosomal 60S Subunit Protein L32
AG	1	Ribosomal 60S Subunit Protein L33a
AH	1	Ribosomal 60S Subunit Protein L34b
AI	1	Ribosomal 60S Subunit Protein L35a
AJ	1	60S Ribosomal Protein L36
AK	1	Ribosomal Protein L37
AL	1	Ribosomal 60S Subunit Protein L38
AM	1	60S Ribosomal Protein L39
AN	1	Rpl40bp
AO	1	60S Ribosomal Protein L41
AP	1	Ribosomal 60S Subunit Protein L42a
AQ	1	Ribosomal 60S Subunit Protein L43a
i	1	Habp4_pai-rbp1 Domain-containing Protein
B	1	40S Ribosomal Protein S0
C	1	40S Ribosomal Protein S1
D	1	Ribosomal 40S Subunit Protein S2
E	1	Ribosomal 40S Subunit Protein S3
F	1	40S Ribosomal Protein S4
G	1	Ribosomal 40S Subunit Protein S5
H	1	40S Ribosomal Protein S6
I	1	40S Ribosomal Protein S7
J	1	40S Ribosomal Protein S8
K	1	Ribosomal 40S Subunit Protein S9B
L	1	Ribosomal 40S Subunit Protein S10a
M	1	Ribosomal 40S Subunit Protein S11a
N	1	40S Ribosomal Protein S12
O	1	Ribosomal 40S Subunit Protein S13
P	1	Ribosomal 40S Subunit Protein S14b
Q	1	Ribosomal 40S Subunit Protein S15
R	1	Ribosomal 40S Subunit Protein S16a
S	1	Ribosomal 40S Subunit Protein S17b
T	1	Ribosomal 40S Subunit Protein S18b
U	1	Ribosomal 40S Subunit Protein S19a
V	1	Ribosomal 40S Subunit Protein S20
W	1	40S Ribosomal Protein S21
X	1	40S Ribosomal Protein S22-a
Y	1	Ribosomal 40S Subunit Protein S23b
Z	1	40S Ribosomal Protein S24
a	1	40S Ribosomal Protein S25
b	1	40S Ribosomal Protein S26
c	1	40S Ribosomal Protein S27
d	1	Ribosomal 40S Subunit Protein S28b
e	1	Ribosomal 40S Subunit Protein S29a
f	1	40S Ribosomal Protein S30
g	1	Ubiquitin-ribosomal 40S Subunit Protein S31 Fusion Protein
h	1	Guanine Nucleotide-binding Protein Subunit Beta-like Protein
Nucleotides(5 molecules)
1	1	25S Ribosomal RNA
3	1	5S Ribosomal RNA
4	1	5.8s Ribosomal RNA
10	1	Mixture of Endogenous E-trnas
A	1	18S Ribosomal RNA
Chemicals and Non-standard biopolymers (463 molecules)
1	10	SPERMIDINE (Link to PubChem not yet available)
2	2	1,4-DIAMINOBUTANE (Link to PubChem not yet available)
3	443	MAGNESIUM ION (Link to PubChem not yet available)
4	8	ZINC ION (Link to PubChem not yet available)

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303