8RGD: High pH (8.0) nitrite-bound MSOX movie series dataset 15 of the copper nitrite reductase from Bradyrhizobium sp. ORS375 (two-domain) [10.2 MGy]

PDB ID: 8RGDDownload
MMDB ID: 250142
PDB Deposition Date: 2023/12/13
Updated in MMDB: 2024/08
Experimental Method:
x-ray diffraction
Resolution: 1.71  Å
Source Organism:
Similar Structures:
Biological Unit for 8RGD: trimeric; determined by author
Molecular Components in 8RGD
Label Count Molecule
Proteins (3 molecules)
3
Copper-containing Nitrite Reductase
Molecule annotation
Chemicals and Non-standard biopolymers (70 molecules)
1
12
alpha-D-glucopyranosealpha-D-glucopyranose
2
9
beta-D-fructofuranosebeta-D-fructofuranose
3
6
COPPER (II) IONCOPPER (II) ION
4
6
NITRITE IONNITRITE ION
5
6
GLYCEROLGLYCEROL
6
6
NITRIC OXIDENITRIC OXIDE
7
3
CARBON DIOXIDECARBON DIOXIDE
8
22
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303