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Taxonomy browser (Photorhabdus thracensis)

Photorhabdus thracensis

Taxonomy ID: 230089 (for references in articles please use NCBI:txid230089)
current name
Photorhabdus thracensis Machado et al. 2018
type strain of Photorhabdus thracensis: CIP:108426, DSM:15199, NCIMB:13952, personal::39-8
basionym:
Photorhabdus temperata subsp. thracensis (Hazir et al. 2004) Tailliez et al. 2010
homotypic synonym:
Photorhabdus luminescens subsp. thracensis Hazir et al. 2004
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Photorhabdus
   Entrez records   
Database name Direct links Links from type
Nucleotide 1,169 15
Protein 8,973 -
Structure 8 -
Popset 10 -
PubMed Central 8 -
Gene 4,967 -
Identical Protein Groups 6,122 -
BioProject 5 -
BioSample 4 2
Datasets Genome 3 -
Taxonomy 1 -

Comments and References:

Hazir S et al. (2004)
Hazir, S., Stackebrandt, E., Lang, E., Schumann, P., Ehlers, R.-U., and Keskin, N. "Two new subspecies of Photorhabdus luminescens, isolated from Heterorhabditis bacteriophora (Nematoda: Heterorhabditidae): Photorhabdus luminescens subsp. kayaii subsp. nov.and Photorhabdus luminescens subsp. thracensis subsp. nov." Syst. Appl. Microbiol. (2004) 27:36-42.
Machado RAR et al. (2018)
Machado, R.A.R., Wuthrich, D., Kuhnert, P., Arce, C.C.M., Thonen, L., Ruiz, C., Zhang, X., Robert, C.A.M., Karimi, J., Kamali, S., Ma, J., Bruggmann, R., and Erb, M. "Whole-genome-based revisit of Photorhabdus phylogeny: proposal for the elevation of most Photorhabdus subspecies to the species level and description of one novel species Photorhabdus bodei sp. nov., and one novel subspecies Photorhabdus laumondii subsp. clarkei subsp. nov." Int. J. Syst. Evol. Microbiol. (2018) 68(8):2664–2681.
Tailliez P et al. (2010)
Tailliez, P., Laroui, C., Ginibre, N., Paule, A., Pags, S. and Boemare, N. "Phylogeny of Photorhabdus and Xenorhabdus based on universally conserved protein-coding sequences and implications for the taxonomy of these two genera. Proposal of new taxa: X. vietnamensis sp. nov., P. luminescens subsp. caribbeanensis subsp. nov., P. luminescens subsp. hainanensis subsp. nov., P. temperata subsp. khanii subsp. nov., P. temperata subsp. tasmaniensis subsp. nov., and the reclassification of P. luminescens subsp. thracensis as P. temperata subsp. thracensis comb. nov." Int. J. Syst. Evol. Microbiol. (2010) 60(8):1921-1937.
VALIDATION LIST No. 98 (2004) (Photorhabdus luminescens subsp. thracensis), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.63360-0
Validation list No. 98: "Validation of publication of new names and new combinations previously effectively published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2004) 54:1006-1006.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Photorhabdus thracensis meta-databases BacDive
2 records from this provider organism-specific BioCyc
GOLD: Go0032738 organism-specific Genomes On Line Database
2639762814: Photorhabdus thracensis:DSM 15199 organism-specific Integrated Microbial Genomes
Photorhabdus thracensis | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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