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Taxonomy browser (Agrobacterium rubi)

Agrobacterium rubi

Taxonomy ID: 28099 (for references in articles please use NCBI:txid28099)
current name
Agrobacterium rubi (Hildebrand 1940) Starr and Weiss 1943 (Approved Lists 1980), nom. approb. 1)
type strain of Agrobacterium rubi: ATCC:13335, CFBP:5509, CFBP:6448, CIP:104332, DSM:6772, HAMBI:1812, ICMP:6428, IFO:13261, JCM:20918, BCCM/LMG:156, BCCM/LMG:17935, NBRC:13261, NCPPB:1854, ICMP:11833, personal::TR3
homotypic synonym:
"Phytomonas rubi" Hildebrand 1940, effective name 2)
Rhizobium rubi (Hildebrand 1940) Young et al. 2001
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Agrobacterium genomic group 11
heterotypic synonym
Agrobacterium genomic species 11
heterotypic synonym
Agrobacterium genomosp. 11
heterotypic synonym
Agrobacterium tumefaciens genomovar G11
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 588 474 190
Protein 28,411 23,462 -
Popset 23 23 -
PubMed Central 66 66 -
Gene 5,092 1 -
SRA Experiments 10 10 -
Protein Clusters 1 1 -
Identical Protein Groups 18,683 18,153 -
BioProject 9 6 -
BioSample 13 12 3
Datasets Genome 11 10 -
Taxonomy 3 1 -

Notes:

Comments and References:

Bergey 8 (Agrobacterium rubi)
Buchanan, R.E., and Gibbons, N.E. (editors): Bergey's Manual of Determinative Bacteriology, 8th edition. The Williams and Wilkins Co., Balitmore, 1974. [Description] [No PubMed record available.]
Hildebrand EM (1940)
Hildebrand, E.M. "Cane gall of brambles caused by Phytomonas n. sp." J. Agric. Res. (1940) 61:685-696. [No PubMed record available.]
Mougel C et al. (2002)
Mougel, C., Thioulouse, J., Perriere, G., and Nesme, X. "A mathematical method for determining genome divergence and species delineation using AFLP." Int. J. Syst. Evol. Microbiol. (2002) 52:573-586. [N.B.: source of 'Agrobacterium genomic group' nomenclature]
Skerman VBD et al. (1980) (Agrobacterium rubi)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Starr MP & Weiss JE (1943)
Starr, M.P., and Weiss, J.E. "Growth of phytopathogenic bacteria in a synthetic asparagin medium." Phytopathology (1943) 33:314-318. [No PubMed record available.]
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]
Young JM et al. (2001)
Young, J.M., Kuykendall, L.D., Martinez -Romero, E., Kerr, A., and Sawada, H. "A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudieet al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis." Int. J. Syst. Evol. Microbiol. (2001) 51:89-103.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Agrobacterium rubi meta-databases BacDive
Rhizobium rubi (Hildebrand 1940) Young et al. 2001 taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0552796 organism-specific Genomes On Line Database
Agrobacterium rubi culture/stock collections Global Catalogue of Microorganisms
3 records from this provider organism-specific Integrated Microbial Genomes
Agrobacterium rubi | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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