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Taxonomy browser (Photorhabdus luminescens)

Photorhabdus luminescens

Taxonomy ID: 29488 (for references in articles please use NCBI:txid29488)
current name
Photorhabdus luminescens (Thomas and Poinar 1979) Boemare et al. 1993
homotypic synonym:
Photorhabdus luminescens (Thomas and Poinar 1979) Boemare et al. 1993 emend. Fischer-LeSaux et al. 1999, emended name
Photorhabdus luminescens (Thomas and Poinar 1979) Boemare et al. 1993 emend. Machado et al. 2019, emended name in [Machado RAR et al. (2019)]
Photorhabdus luminescens (Thomas and Poinar 1979) Boemare et al. 1993 emend. Machado et al. 2023, emended name in [Machado RAR et al. (2023c)]
basionym:
Xenorhabdus luminescens Thomas and Poinar 1979 (Approved Lists 1980), nom. approb. 1) in [Skerman VBD et al. (1980)]
type strain of Xenorhabdus luminescens: ATCC:29999, CIP:106429, DSM:3368, personal::Hb
homotypic synonym:
Photorhabdus luminescens (Poinar and Thomas 1979) (sic) Boemare et al. 1993
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Morganellaceae; Photorhabdus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 11,925 7,390 642
Protein 66,292 52,907 -
Structure 35 35 -
Popset 23 23 -
PubMed Central 2,248 2,248 -
Gene 9,579 4,687 -
SRA Experiments 84 82 -
Protein Clusters 3,133 3,133 -
Identical Protein Groups 40,276 38,451 -
BioProject 38 30 -
BioSample 119 106 56
Datasets Genome 30 17 -
PubChem BioAssay 12 12 -
Taxonomy 8 1 -

Notes:

Comments and References:
Machado RAR et al. (2019), PubMed: abstract
Machado, R.A.R., Bruno, P., Arce, C.C.M., Liechti, N., Köhler, A., Bernal, J., Bruggmann, R., and Turlings, T.C.J. "Photorhabdus khanii subsp. guanajuatensis subsp. nov., isolated from Heterorhabditis atacamensis, and Photorhabdus luminescens subsp. mexicana subsp. nov., isolated from Heterorhabditis mexicana entomopathogenic nematodes." Int. J. Syst. Evol. Microbiol. (2019) 69(3):652-661.
Machado RAR et al. (2023c), PubMed: abstract
Machado, R.A.R., Bhat, A.H., Castaneda-Alvarez, C., Půža, V., and San-Blas, E. "Photorhabdus aballayi sp. nov. and Photorhabdus luminescens subsp. venezuelensis subsp. nov., isolated from Heterorhabditis amazonensis entomopathogenic nematodes." Int. J. Syst. Evol. Microbiol. (2023) 73(5):005872.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Boemare NE et al. (1993)
Boemare, N.E., Akhurst, R.J., and Mourant, R.G. "DNA relatedness between Xenorhabdus spp. (Enterobacteriaceae), symbiotic bacteria of entomopathogenic nematodes, and a proposal to transfer Xenorhabdus luminescens to a new genus, Photorhabdus gen. nov." Int. J. Syst. Bacteriol. (1993) 43:249-255. [No PubMed record available.]
Fischer-Le Saux M et al. (1999)
Fischer-Le Saux, M., Viallard, V., Brunel, B., Normand, P., and Boemare, N.E. "Polyphasic classification of the genus Photorhabdus and proposal of new taxa: P. luminescens subsp. luminescens subsp. nov., P. luminescens subsp. akhurstii subsp. nov., P. luminescens subsp. laumondii subsp. nov., P. temperata sp. nov., P. temperata subsp. temperata subsp. nov. and P. asymbiotica sp. nov." Int. J. Syst. Bacteriol. (1999) 49:1645-1656.
Machado RAR et al. (2018)
Machado, R.A.R., Wuthrich, D., Kuhnert, P., Arce, C.C.M., Thonen, L., Ruiz, C., Zhang, X., Robert, C.A.M., Karimi, J., Kamali, S., Ma, J., Bruggmann, R., and Erb, M. "Whole-genome-based revisit of Photorhabdus phylogeny: proposal for the elevation of most Photorhabdus subspecies to the species level and description of one novel species Photorhabdus bodei sp. nov., and one novel subspecies Photorhabdus laumondii subsp. clarkei subsp. nov." Int. J. Syst. Evol. Microbiol. (2018) 68(8):2664–2681.
Szallas E et al. (1997)
Szallas, E., Koch, C., Fodor, A., Burghardt, J., Buss, O., Szentirmai, A., Nealson, K.H., and Stackebrandt, E. "Phylogenetic evidence for the taxonomic heterogeneity of Photorhabdus luminescens." Int. J. Syst. Bacteriol. (1997) 47:402-407.
Thomas GM & Poinar GO Jr (1979)
Thomas, G.M., and Poinar, G.O. Jr. "Xenorhabdus gen. nov., a genus of entomopathogenic, nematophilic bacteria of the family Enterobacteriaceae." Int. J. Syst. Bacteriol. (1979) 29:352-360. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Photorhabdus luminescens meta-databases BacDive
GOLD: 12 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Photorhabdus luminescens culture/stock collections Global Catalogue of Microorganisms
11 records from this provider organism-specific Integrated Microbial Genomes
Photorhabdus luminescens (T) | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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