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Taxonomy browser (Porphyromonas somerae)

Porphyromonas somerae

Taxonomy ID: 322095 (for references in articles please use NCBI:txid322095)
current name
Porphyromonas somerae Summanen et al. 2006 emend. Hahnke et al. 2016
type strain of Porphyromonas somerae: ATCC:BAA-1230, CCUG:51464, JCM:13867, WAL:6690, DSM:23386
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,193 994 199
Protein 13,224 13,171 -
Popset 1 1 -
PubMed Central 117 117 -
SRA Experiments 9 8 -
Protein Clusters 1,037 1,037 -
Identical Protein Groups 10,792 10,649 -
BioProject 9 8 -
BioSample 27 25 6
Datasets Genome 9 8 -
PubChem BioAssay 5 5 -
Taxonomy 2 1 -

Comments and References:

Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.
Summanen PH et al. (2005)
Summanen, P.H., Durmaz, B., Vaisanen, M.-L., Liu, C., Molitoris, D., Eerola, E., Helander, I.M., and Finegold, S.M. "Porphyromonas somerae sp. nov., a human pathogen distinct from Porphyromonas levii." J. Clin. Microbiol. (2005) 43:4455-4459.
VALIDATION LIST No. 109 (2006), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.64380-0
Validation List No. 109. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2006) 56:925-927.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Porphyromonas somerae meta-databases BacDive
2 records from this provider organism-specific BioCyc
Porphyromonas somerae Summanen et al. 2006 taxonomy/phylogenetic Encyclopedia of life
GOLD: 2 Organisms organism-specific Genomes On Line Database
Porphyromonas somerae culture/stock collections Global Catalogue of Microorganisms
2 records from this provider organism-specific Integrated Microbial Genomes
Porphyromonas somerae | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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