Taxonomy browser (Methylorubrum extorquens)

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Taxonomy browser (Methylorubrum extorquens)

Methylorubrum extorquens

Taxonomy ID: 408 (for references in articles please use NCBI:txid408)

current name

Methylorubrum extorquens (Urakami and Komagata 1984) Green and Ardley 2018

type strain of Methylorubrum extorquens (Urakami and Komagata 1984): ATCC :43645, CCUG :2084, DSM :1337, IAM:12631, IFO :15687, JCM :2802, NBRC :15687, NCCB:78015, NCIMB:9399, VKM :B-2064, personal::TK 0001

basionym:

Protomonas extorquens (ex Bassalik 1913) Urakami and Komagata 1984

homotypic synonym:

"Bacillus extorquens" Bassalik 1913, effective name¹⁾

"Vibrio extorquens" (Bassalik 1913) Bhat and Barker 1948, effective name²⁾

"Pseudomonas extorquens" (Bassalik 1913) Krasil'nikov 1949, effective name³⁾

"Flavobacterium extorquens" (Bassalik 1913) Bassalik et al. 1960, effective name⁴⁾

Methylobacterium extorquens (Urakami and Komagata 1984) Bousfield and Green 1985 emend. Kato et al. 2008, emended name⁵⁾

NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Methylobacterium dichloromethanicum Doronina et al. 2000 in [Validation List No. 77 (2000)]

type strain of Methylobacterium dichloromethanicum: personal::DM4, CIP:106787, DSM :6343, VKM :B-2191

homotypic synonym:

"Methylobacterium extorquens subsp. chloromethanicum" (McDonald et al. 2001) Alessa et al. 2021, effective name⁶⁾ in [Alessa O et al. (2021)]

Methylobacterium dichloromethanicum subsp. dichloromethanicum (Doronina et al. 2000) Hördt et al. 2020 in [Validation List No. 194 (2020), Hördt A et al. (2020)]

heterotypic synonym

Methylobacterium chloromethanicum McDonald et al. 2001

type strain of Methylobacterium chloromethanicum: NCIMB:13688, VKM :B-2223, personal::CM4

homotypic synonym:

Methylobacterium dichloromethanicum subsp. chloromethanicum (McDonald et al. 2001) Hördt et al. 2020 in [Validation List No. 194 (2020), Hördt A et al. (2020)]

Lineage( full ): cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylorubrum

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	3,291	1,864	13
Protein	118,543	88,290	-
Structure	62	19	-
Popset	27	27	-
GEO Datasets	266	99	-
PubMed Central	1,223	1,223	-
Gene	35,461	1	-
SRA Experiments	285	180	-
Protein Clusters	4,965	4,965	-
Identical Protein Groups	70,919	65,887	-
BioProject	59	33	-
BioSample	323	193	8
Datasets Genome	26	20	-
PubChem BioAssay	1	-	-
Taxonomy	6	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Validation List No. 77 (2000), PubMed: abstract

VALIDATION LIST No. 77. Int. J. Syst. Evol. Microbiol. (2000) 50(6):1953.

Alessa O et al. (2021), doi: 10.3389/fmicb.2021.740610, PubMed: abstract

Alessa, O., Ogura, Y., Fujitani, Y., Takami, H., Hayashi, T., Sahin, N., and Tani, A. "Comprehensive comparative genomics and phenotyping of Methylobacterium species." Front. Microbiol. (2021) 12:740610.

Validation List No. 194 (2020), PubMed: abstract

Validation List No. 194: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(7):4043-4049.

Hördt A et al. (2020), doi: 10.3389/fmicb.2020.00468, PubMed: abstract

Hördt, A., López, M.G., Meier-Kolthoff, J.P., Schleuning, M., Weinhold, L.-M., Tindall, B.J., Gronow, S., Kyrpides, N.C., Woyke, T., and Göker, M. "Analysis of 1,000+ type-strain genomes substantially improves taxonomic classification of Alphaproteobacteria." Front. Microbiol. (2020) 11:468.

Doronina NV et al. (2000b)

Doronina, N.V., Trotsenko, Y.A., Tourova, T.P., Kuznetsov, B.B., and Leisinger, T. "Methylopila helvetica sp. nov. and Methylobacterium dichloromethanicum sp. nov.--novel aerobic facultatively methylotrophic bacteria utilizing dichloromethane." Syst. Appl. Microbiol. (2000) 23:210-218.

Bousfield IJ & Green PN (1985)

Bousfield, I.J., and Green, P.N. "Reclassification of bacteria of the genus Protomonas Urakami and Komagata 1984 in the genus Methylobacterium (Patt, Cole, and Hanson) emend. Green and Bousfield 1983." Int. J. Syst. Bacteriol. (1985) 35:209. [No PubMed record available.]

Kato Y et al. (2005)

Kato, Y., Asahara, M., Arai, D., Goto, K., and Yokota, A. "Reclassification of Methylobacterium chloromethanicum and Methylobacterium dichloromethanicum as later subjective synonyms of Methylobacterium extorquens and of Methylobacterium lusitanum as a later subjective synonym of Methylobacterium rhodesianum." J. Gen. Appl. Microbiol. (2005) 51:287-299.

Kato Y et al. (2008)

Kato, Y., Asahara, M., Goto, K., Kasai, H., and Yokota, A. "Methylobacterium persicinum sp. nov., Methylobacterium komagatae sp. nov., Methylobacterium brachiatum sp. nov., Methylobacterium tardum sp. nov. and Methylobacterium gregans sp. nov., isolated from freshwater." Int. J. Syst. Evol. Microbiol. (2008) 58:1134-1141.

Krasil'nikov NA (1949)

Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]

McDonald IR et al. (2001)

McDonald, I.R., Doronina, N.V., Trotsenko, Y.A., McAnulla, C., and Murrell, J.C. "Hyphomicrobium chloromethanicum sp. nov. and Methylobacterium chloromethanicum sp. nov., chloromethane-utilizing bacteria isolated from a polluted environment." Int. J. Syst. Evol. Microbiol. (2001) 51:119-122.

Urakami T & Komagata K (1984)

Urakami, T., and Komagata, K. "Protomonas, a new genus of facultatively methylotrophic bacteria." Int. J. Syst. Bacteriol. (1984) 34:188-201. [No PubMed record available.]

Bassalik C et al. (1960)

Bassalik, C., Janota-Bassalik, L., and Brison, J. "Etude sur Flavobacterium extorquens (ex Pseudomonas extorquens)." Ann. Inst. Pasteur (Paris) (1960) 98:165-168. [No PubMed record available.]

Green PN & Ardley JK (2018)

Green, P.N., and Ardley, J.K. "Review of the genus Methylobacterium and closely related organisms: a proposal that some Methylobacterium species be reclassified into a new genus, Methylorubrum gen. nov." Int. J. Syst. Evol. Microbiol. (2018) 68:2727-2748.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Methylorubrum extorquens	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
GOLD: 16 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Methylobacterium extorquens	culture/stock collections	Global Catalogue of Microorganisms
13 records from this provider	organism-specific	Integrated Microbial Genomes
Flavobacterium extorquens	taxonomy/phylogenetic	Integrated Taxonomic Information System
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Methylorubrum extorquens (T) \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry

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A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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