Genome assembly ASM2825284v1
- Submitted GenBank assembly
- GCA_028252845.1
- Taxon
- Porticoccaceae bacterium
- Isolate
- AH-654-P01
- WGS project
- JAOKLL01
- Submitter
- Bigelow Laboratory for Ocean Sciences
- Date
- Jan 30, 2023
Genome notes
NCBI has noted the following for this genome assembly. View definitions
- derived from single cell
- from large multi-isolate project
- genus undefined
Assembly statistics
GenBank | |
---|---|
Genome size | 652.3 kb |
Total ungapped length | 652.3 kb |
Number of contigs | 45 |
Contig N50 | 29.6 kb |
Contig L50 | 6 |
GC percent | 49 |
Genome coverage | 70.4x |
Assembly level | Contig |
Sample details
- BioSample ID
- SAMN29372597
- Description
- AH-654-P01
- Comment
- Keywords: GSC:MIxS;MISAG:6.0
- Submitter
- Bigelow Laboratory for Ocean Sciences
- Collection date
- Apr 2, 2019
- Depth
- 1
- Broad-scale environmental context
- marine
- Local-scale environmental context
- coastal
- Environmental medium
- sea water
- Geographic location
- USA: East Boothbay ME
- Latitude and longitude
- 43.860494 N 69.578706 W
- Isolate
- AH-654-P01
- Isolation source
- single cell amplified by WGA-X; Bigelow Laboratory Dock
- Reference for biomaterial
- Decoupling of respiration rates and abundance in marine prokaryoplankton
- Unnamed: 0
- 4322
- Unnamed: 0.1
- 4322
- Unnamed: 0.1.1
- 4322
- Unnamed: 0.1.1.1
- 4322
- Unnamed: 0.1.1.1.1
- 4322
- Unnamed: 0.1.1.1.1.1
- 4322
- Sample name
- AH-654-P01
- Models
- MISAG.water
- Package
- MISAG.water.6.0
- Submission date
- 2022-06-27T11:49:11.647
- Publication date
- 2022-10-12T00:51:33.340
- Last updated
- 2022-10-12T00:51:33.340
Assembly methods
- Sequencing technology
- Illumina NextSeq
- Comment
- The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
- Assembly method
- SPAdes v. 3.9.0
Additional genomes
Browse all Porticoccaceae bacterium genomes (348)BioProject
PRJNA846736Gulf of Maine single cell genome to phenome
Annotation details
GenBank | |
---|---|
Provider | NCBI |
Name | NCBI Prokaryotic Genome Annotation Pipeline (PGAP) |
Date | Sep 25, 2022 |
Genes | 642 |
Protein-coding | 627 |
Software version | 6.3 |
About PGAP
The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.
Continue readingQuality analysis
Taxonomy check
- Taxonomy check status
- Inconclusive
- Best match status
- low_coverage
- Submitted organism name
- Porticoccaceae bacterium
- Submitted species name
- Porticoccaceae bacterium
Average Nucleotide Identity (ANI) match details
Best match type-strain for submitted organism | Best match type-strain | |
---|---|---|
Type assembly | n/a | GCA_000966245.1 |
Organism name | n/a | Teredinibacter purpureus |
Type category | n/a | type |
ANI | n/a | 92.32% |
Assembly coverage | n/a | 0.72% |
Type assembly coverage | n/a | 0.09% |
Chromosomes
Note: This contig-level genome assembly includes 45 contigs and no assembled chromosomes.
Revision history
This record has not been revised
GenBank | RefSeq | Name | Level | Date | Action |
---|---|---|---|---|---|
GCA_028252845.1 | n/a | ASM2825284v1 | Contig | Jan 30, 2023 |