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Genome assembly ASM2825284v1

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Submitted GenBank assembly
GCA_028252845.1
Taxon
Porticoccaceae bacterium
Isolate
AH-654-P01
WGS project
JAOKLL01
Submitter
Bigelow Laboratory for Ocean Sciences
Date
Jan 30, 2023

Genome notes

NCBI has noted the following for this genome assembly. View definitions

  • derived from single cell
  • from large multi-isolate project
  • genus undefined

Assembly statistics

GenBank
Genome size652.3 kb
Total ungapped length652.3 kb
Number of contigs45
Contig N5029.6 kb
Contig L506
GC percent49
Genome coverage70.4x
Assembly levelContig

Sample details

BioSample ID
SAMN29372597
Description
AH-654-P01
Comment
Keywords: GSC:MIxS;MISAG:6.0
Submitter
Bigelow Laboratory for Ocean Sciences
Collection date
Apr 2, 2019
Depth
1
Broad-scale environmental context
marine
Local-scale environmental context
coastal
Environmental medium
sea water
Geographic location
USA: East Boothbay ME
Latitude and longitude
43.860494 N 69.578706 W
Isolate
AH-654-P01
Isolation source
single cell amplified by WGA-X; Bigelow Laboratory Dock
Reference for biomaterial
Decoupling of respiration rates and abundance in marine prokaryoplankton
Unnamed: 0
4322
Unnamed: 0.1
4322
Unnamed: 0.1.1
4322
Unnamed: 0.1.1.1
4322
Unnamed: 0.1.1.1.1
4322
Unnamed: 0.1.1.1.1.1
4322
Sample name
AH-654-P01
Models
MISAG.water
Package
MISAG.water.6.0
Submission date
2022-06-27T11:49:11.647
Publication date
2022-10-12T00:51:33.340
Last updated
2022-10-12T00:51:33.340

Assembly methods

Sequencing technology
Illumina NextSeq
Comment
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Assembly method
SPAdes v. 3.9.0

Additional genomes

Browse all Porticoccaceae bacterium genomes (348)

BioProject

PRJNA846736

Gulf of Maine single cell genome to phenome

Annotation details

GenBank
ProviderNCBI
NameNCBI Prokaryotic Genome Annotation Pipeline (PGAP)
DateSep 25, 2022
Genes642
Protein-coding627
Software version6.3

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

Taxonomy check

Taxonomy check status
Inconclusive
Best match status
low_coverage
Submitted organism name
Porticoccaceae bacterium
Submitted species name
Porticoccaceae bacterium

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_000966245.1
Organism name

n/a

Teredinibacter purpureus
Type category

n/a

type
ANI

n/a

92.32%
Assembly coverage

n/a

0.72%
Type assembly coverage

n/a

0.09%

Chromosomes

Note: This contig-level genome assembly includes 45 contigs and no assembled chromosomes.

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_028252845.1

n/a

ASM2825284v1ContigJan 30, 2023