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Genome Information for Epithemia catenata
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This project collects the sequencing data and assemblies generated for Epithemia sp. CRS-2021a, common name pennate diatom, to facilitate genome assembly and annotation as part of the Aquatic Symbiosis Genomics (ASG) Project (https://www.aquaticsymbiosisgenomics.org/) from samples supplied by the ASG Evolution-of-New-Symbioses Hub (https://www.aquaticsymbiosisgenomics.org/collaborators/evolution-of-new-symbioses-in-single-celled-eukaryotes/). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https://www.darwintreeoflife.org/project-resources/).
| Accession | PRJEB72604 |
| Type | Umbrella project |
| Organism | Epithemia catenata[Taxonomy ID: 2962568] Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Rhopalodiales; Rhopalodiaceae; Epithemia; Epithemia catenata |
| Submission | Registration date: 13-Feb-2024
WELLCOME SANGER INSTITUTE |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (WGS master) | 2 |
| SRA Experiments | 6 |
| Other datasets |
| BioSample | 7 |
| Assembly | 2 |
uoEpiScra encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Scaffolds Contigs Total |
1
1
2
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJEB74368 | Contigs | Epithemia catenata | Epithemia sp. CRS-2021a (pennate diatom) genome assembly, uoEpiScra1, alternate haplotype (WELLCOME SANGER INSTITUTE) | | PRJEB74367 | Scaffolds | Epithemia catenata | Epithemia sp. CRS-2021a (pennate diatom) genome assembly, uoEpiScra1 (WELLCOME SANGER INSTITUTE) |
|
| Other | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJEB72603 | Epithemia catenata | Epithemia sp. CRS-2021a (pennate diatom), genomic and transcriptomic data (WELLCOME SANGER INSTITUTE) | | PRJEB72602 | algae metagenome | Epithemia sp. CRS-2021a (pennate diatom) algae metagenome assembly, uoEpiScra1.metagenome (WELLCOME SANGER INSTITUTE) |
|