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Accession: PRJNA1167696 ID: 1167696

Sequences of clinical Salmonella isolates from Kenya

Whole genome sequences extracted from Salmonella isolates collected from diarrhoeic patients in Nairobi, Kenya between 2020 and 2023.
AccessionPRJNA1167696
Data TypeGenome sequencing
ScopeMultispecies
Grants
  • "Epidemiology and Genomics of Multidrug resistant Salmonella Typhi infections in Kenya: The role of carriage in an endemic setting" (Grant ID R01 AI099525, National Institute of Allergy and Infectious Diseases Extramural Activities)
SubmissionRegistration date: 1-Oct-2024
Kenya Medical Research Institute
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)33
SRA Experiments33
Other datasets
BioSample33
Assembly33
Assembly details:
Assembly levelNumber of Assemblies
33
33
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_043109225.1ContigJBICQT000000000SAMN44011399
KEMRI_2023En16
GCA_043109185.1ContigJBICQU000000000SAMN44011398
KEMRI_2023Eb4
GCA_043109165.1ContigJBICQS000000000SAMN44011400
KEMRI_2023Kb17
GCA_043109075.1ContigJBICQR000000000SAMN44011401
KEMRI_2023Br19
GCA_043109095.1ContigJBICQQ000000000SAMN44011402
KEMRI_2023Br20
GCA_043108985.1ContigJBICQO000000000SAMN44011404
KEMRI_2023Br22
GCA_043109005.1ContigJBICQP000000000SAMN44011403
KEMRI_2023Br21
GCA_043108995.1ContigJBICQN000000000SAMN44011405
KEMRI_2023Kt40
GCA_043108925.1ContigJBICQM000000000SAMN44011406
KEMRI_2023Kt46
GCA_043108905.1ContigJBICQL000000000SAMN44011407
KEMRI_2023Hn49
GCA_043108815.1ContigJBICQK000000000SAMN44011408
KEMRI_2023Np50
GCA_043108825.1ContigJBICQJ000000000SAMN44011409
KEMRI_2023Mc51
GCA_043108785.1ContigJBICQI000000000SAMN44011410
KEMRI_2023Eb52
GCA_043108745.1ContigJBICQG000000000SAMN44011412
KEMRI_2023Np96
GCA_043108675.1ContigJBICQH000000000SAMN44011411
KEMRI_2023Tm95
GCA_043108665.1ContigJBICQF000000000SAMN44011413
KEMRI_2023Np97
GCA_043108555.1ContigJBICQD000000000SAMN44011415
KEMRI_2023Tm99
GCA_043108575.1ContigJBICQE000000000SAMN44011414
KEMRI_2023On98
GCA_043108545.1ContigJBICQC000000000SAMN44011416
KEMRI_2023Np100
GCA_043108525.1ContigJBICQB000000000SAMN44011417
KEMRI_2023En101
GCA_043108445.1ContigJBICQA000000000SAMN44011418
KEMRI_2023Br102
GCA_043108405.1ContigJBICPY000000000SAMN44011420
KEMRI_2023Bc104
GCA_043108395.1ContigJBICPZ000000000SAMN44011419
KEMRI_2023Cg103
GCA_043108365.1ContigJBICPW000000000SAMN44011422
KEMRI_2023Np106
GCA_043108375.1ContigJBICPX000000000SAMN44011421
KEMRI_2023Ad105
GCA_043108235.1ContigJBICPT000000000SAMN44011425
KEMRI_2023Gn109
GCA_043108245.1ContigJBICPV000000000SAMN44011423
KEMRI_2023Mt107
GCA_043108205.1ContigJBICPU000000000SAMN44011424
KEMRI_2023On108
GCA_043108165.1ContigJBICPS000000000SAMN44011426
KEMRI_2023Ub110
GCA_043108175.1ContigJBICPR000000000SAMN44011427
KEMRI_2023En111
GCA_043108085.1ContigJBICPP000000000SAMN44011429
KEMRI_2023Np113
GCA_043108015.1ContigJBICPO000000000SAMN44011430
KEMRI_2023If118
GCA_043108045.1ContigJBICPQ000000000SAMN44011428
KEMRI_2023Ky112
SRA Data Details
ParameterValue
Data volume, Gbases26
Data volume, Mbytes9520

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