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Accession: PRJNA188411 ID: 188411

Colinus virginianus strain:Texas (northern bobwhite)

Colinus virginianus strain:Texas Genome sequencing and assembly

See Genome Information for Colinus virginianus
This project seeks to assemble and annotate the bobwhite (Colinus virginianus) genome, with subsequent comparative analyses involving other established avian genome assemblies.
AccessionPRJNA188411
Data TypeGenome sequencing and assembly
ScopeMonoisolate
OrganismColinus virginianus[Taxonomy ID: 9014]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Odontophoridae; Colinus; Colinus virginianus
Publications
  • Oldeschulte DL et al., "Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size.", G3 (Bethesda), 2017 Sep 7;7(9):3047-3058
  • Halley YA et al., "A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene.", PLoS One, 2014;9(3):e90240
SubmissionRegistration date: 20-Mar-2014
Texas A&M University
RelevanceDeclining Wildlife Species and Experimental Wildlife Model
Locus Tag PrefixH355
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2878
WGS master2
SRA Experiments3
Protein Sequences17165
Publications
PubMed2
PMC2
Other datasets
BioSample1
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases198
Data volume, Mbytes98602

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